Pinned Repositories
CredibleSet
R script for credible sets
fatdistnGWAS
Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
gwas-scripts
A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizing results
hail-minimal
A DNAnexus applet for running hail.is python scripts
hail-on-dnanexus
An unofficial alternative to DXJupyterlab Spark Cluster App
longitudinal_primarycare
Scripts for assessing longitudinal quantitative traits in UKBIOBANK-linked primary care data
NeuralNetwork-Examples
The same small networks implemented in different frameworks
obesity_femrepr_MR
Code for analyses in "Obesity and risk of female reproductive disorders: A Mendelian Randomisation Study"
TowardsDeepPhenotyping
ukbb-meta
Lindgren-group's Repositories
lindgrengroup/fatdistnGWAS
Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
lindgrengroup/obesity_femrepr_MR
Code for analyses in "Obesity and risk of female reproductive disorders: A Mendelian Randomisation Study"
lindgrengroup/hail-on-dnanexus
An unofficial alternative to DXJupyterlab Spark Cluster App
lindgrengroup/gwas-scripts
A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizing results
lindgrengroup/longitudinal_primarycare
Scripts for assessing longitudinal quantitative traits in UKBIOBANK-linked primary care data
lindgrengroup/Afib-Stroke-Overlap
Code and calls to software that accompanies manuscript on the overlap of atrial fibrillation genetics and cardioembolic stroke
lindgrengroup/cell_line
lindgrengroup/CredibleSet
R script for credible sets
lindgrengroup/hail-minimal
A DNAnexus applet for running hail.is python scripts
lindgrengroup/NeuralNetwork-Examples
The same small networks implemented in different frameworks
lindgrengroup/p50_Infertility
lindgrengroup/TowardsDeepPhenotyping
lindgrengroup/ukbb-meta
lindgrengroup/alexd
lindgrengroup/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
lindgrengroup/BRaVa_curation
lindgrengroup/causal.relationships.between.obesity.and.leading.causes.of.death.in.men.and.women
Code and genetic risk scores related to "Causal relationships between obesity and leading causes of death in men and women"
lindgrengroup/CellProfilerPipelines
lindgrengroup/infertility_hormones
Scripts for infertility and hormone GWAS meta-analyses and follow-up
lindgrengroup/multivariate
lindgrengroup/poe_shapeit
lindgrengroup/Reverse-Variant-Calling
lindgrengroup/SAIGE_gene_munging
lindgrengroup/share
Files to be shared externally.
lindgrengroup/UveitisJIA_MHC-fineMapping
Scripts and data used in analyses for "An amino acid motif in HLA-DRβ1 distinguishes patients with uveitis in juvenile idiopathic arthritis." Preprint: https://www.biorxiv.org/content/early/2017/08/14/140954