lindseyguan

doing computational structural biology in the keating lab | prev cs + bio @ cal

Massachusetts Institute of Technology

Pinned Repositories

a3mtools
tools for reading, manipulating, and writing a3m MSA files in python
Language:Python00
AFProfile
Language:Python00
alphafold_v3
Open source code for AlphaFold (Multimer v3)
Language:Python0 0 00
dl_binder_design
Language:Python0 0 00
lindseyguan.github.io
Language:HTML0 1 00
Mosaist
Language:C++0 0 00
mrna-display
Language:Jupyter Notebook0 3 00
openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Language:Python0 0 00
PCSM-VAE
VAE for Encoding Molecular Dynamics Simulations of Protein Condensates and Small-Molecule Drugs
Language:Jupyter Notebook00
rla
Residue Level Alignment
Language:Python0 0 00

lindseyguan's Repositories

lindseyguan/a3mtools
tools for reading, manipulating, and writing a3m MSA files in python
Language:Python00
lindseyguan/AFProfile
Language:Python00
lindseyguan/alphafold_v3
Open source code for AlphaFold (Multimer v3)
Language:Python0 0 00
lindseyguan/dl_binder_design
Language:Python0 0 00
lindseyguan/lindseyguan.github.io
Language:HTML0 1 00
lindseyguan/Mosaist
Language:C++0 0 00
lindseyguan/mrna-display
Language:Jupyter Notebook0 3 00
lindseyguan/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Language:Python0 0 00
lindseyguan/PCSM-VAE
VAE for Encoding Molecular Dynamics Simulations of Protein Condensates and Small-Molecule Drugs
Language:Jupyter Notebook00
lindseyguan/rla
Residue Level Alignment
Language:Python0 0 00