Code, notebook and examples related to La Manno and Gyllborg et al. 2016
Install Anaconda: https://www.continuum.io/downloads
After installation, use the conda update command to update conda: conda update conda
To execute the pseudotime analysis R and rpy2 libraries must be installed
- Download/Clone the sourcecode
- Move to the folder
cd ipynb-lamanno2016 - Run jupyter notebook
jupyter - Select the notebook and run it
Code to run Bayesian regression analysis and process posteriors has been ported to R by Satoshi Koyama skoyama427 and it is available at the following repo: BayesianGLM