/1101BioMedDataMining

Lecture scripts and My homework in NTU-1101-BioMedDataMining.

Primary LanguagePython

2021 Summer Bio-Datamining

Week1: Git Homework

Fork, create a branch, answer question, commit, push and finally pull request.

bash hw1.sh

Week2: Python Homework

Read vcf and calculate number of ["0/0", "0/1", "1/0", "1/1"] in each chromosome.

cd hw2
python3 hw2.easy.py

However, the input vcf APTVCF0921_del_sort_norm_sample_wgstype_contig_sort.vcf is not available online

Week3: Blast and Gene Expression Analysis

https://github.com/linnil1/1101BioMedDataMining/tree/main/hw3

Week4: Clustering and Homework of Deep Learning

https://github.com/linnil1/1101BioMedDataMining/tree/main/hw4

Week5: GATK and WGAS + PRS

https://github.com/linnil1/1101BioMedDataMining/tree/main/hw5

Week6: ChIP-seq Analysis

https://github.com/linnil1/1101BioMedDataMining/tree/main/hw6

Note: Protein Structure Prediction (AlphaFold and RosettaFold) is not included in my repo.

Week?: Mock test before Final

https://github.com/linnil1/1101BioMedDataMining/tree/main/final

Week_last: Final

https://github.com/linnil1/1101BioMedDataMining/tree/main/final2