2021 Summer Bio-Datamining
Week1: Git Homework
Fork, create a branch, answer question, commit, push and finally pull request.
bash hw1.sh
Week2: Python Homework
Read vcf and calculate number of ["0/0", "0/1", "1/0", "1/1"] in each chromosome.
cd hw2
python3 hw2.easy.py
However, the input vcf APTVCF0921_del_sort_norm_sample_wgstype_contig_sort.vcf
is not available online
Week3: Blast and Gene Expression Analysis
https://github.com/linnil1/1101BioMedDataMining/tree/main/hw3
Week4: Clustering and Homework of Deep Learning
https://github.com/linnil1/1101BioMedDataMining/tree/main/hw4
Week5: GATK and WGAS + PRS
https://github.com/linnil1/1101BioMedDataMining/tree/main/hw5
Week6: ChIP-seq Analysis
https://github.com/linnil1/1101BioMedDataMining/tree/main/hw6
Note: Protein Structure Prediction (AlphaFold and RosettaFold) is not included in my repo.
Week?: Mock test before Final
https://github.com/linnil1/1101BioMedDataMining/tree/main/final
Week_last: Final
https://github.com/linnil1/1101BioMedDataMining/tree/main/final2