extract_specific_lines is a tool to extract specific lines which maps the query ids (of the query file) from the subject file.
pip install extract_specific_lines
There will be a command extract_specific_lines created under the same directory as your pip command.
usage: extract_specific_lines.py [-h] [-q <str> [<str> ...]] [-f <query file>]
[-s [<subject file>]] [-s1 <pattern>]
[-s2 <pattern>] [-d1 [<int>]] [-d2 [<int>]]
[-o [<outfile>]] [-v] [-V] [--version]
to extract specific lines from the subject file which maps the query ids.
written by Guanliang MENG
optional arguments:
-h, --help show this help message and exit
-q <str> [<str> ...] query list
-f <query file> query list file
-s [<subject file>] subject file [stdin]
-s1 <pattern> query file sep_pattern [\s+]
-s2 <pattern> subject file sep_pattern [\s+]
-d1 [<int>] which field in the query_file is to used? [0]
-d2 [<int>] which field in the subject_file is to used? [0]
-o [<outfile>] outfile [stdout]
-v invert the output [False]
-V verbose output
--version show program's version number and exit
Guanliang MENG
Currently I have no plan to publish extract_specific_lines. However, if you use this program in your analysis, or you "steal" the idea/codes of this program into your script, I should be one of the co-authors in your publication!!!