Pinned Repositories
AlphaFold-StepByStep
Run AlphaFold2 (and multimer) step by step
GAP
GFF Annotation Paser (GAP) is a tool for parsing Gencode/Ensembl GTF and NCBI GFF3 genome annotation files.
GPS_Pupylation
GPS系列算法之Pupylation预测
icSHAPE-pipe
Pipeline to calculate icSHAPE score in genome with sliding window strategy
IPyRSSA
Integrative Python library for RNA Secondary Structure Analysis
RIP-icSHAPE-MaP
icSHAPE-MaP analysis
RNA_Covariation
A tutorial about RNA covary base pairs calling
RNA_Structure_Dynamics
SARS-CoV-2
The analysis scripts for SARS-CoV-2 RNA structure
SPOT-RNA
*PyTorch implementations* of SPOT-RNA [Singh et al., 2019](https://doi.org/10.1038/s41467-019-13395-9). See the results and the discussion in Deep_Into_SPOT-RNA.pdf
lipan6461188's Repositories
lipan6461188/AlphaFold-StepByStep
Run AlphaFold2 (and multimer) step by step
lipan6461188/IPyRSSA
Integrative Python library for RNA Secondary Structure Analysis
lipan6461188/icSHAPE-pipe
Pipeline to calculate icSHAPE score in genome with sliding window strategy
lipan6461188/SARS-CoV-2
The analysis scripts for SARS-CoV-2 RNA structure
lipan6461188/GAP
GFF Annotation Paser (GAP) is a tool for parsing Gencode/Ensembl GTF and NCBI GFF3 genome annotation files.
lipan6461188/RNA_Covariation
A tutorial about RNA covary base pairs calling
lipan6461188/RNA_Structure_Dynamics
lipan6461188/RIP-icSHAPE-MaP
icSHAPE-MaP analysis
lipan6461188/Sequence-Alignment
Qt框架下的序列比对工具
lipan6461188/ZIKV-RNA-Structure
Scripts to analyze ZIKV RNA Structure with icSHAPE and PARIS data
lipan6461188/SPOT-RNA
*PyTorch implementations* of SPOT-RNA [Singh et al., 2019](https://doi.org/10.1038/s41467-019-13395-9). See the results and the discussion in Deep_Into_SPOT-RNA.pdf
lipan6461188/A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
lipan6461188/align_plot
a programe to plot icSHAPE score of mutiple aligned species...
lipan6461188/cryodrgn
Neural networks for cryo-EM reconstruction
lipan6461188/cuda-uvm-gpt2
PyTorch-UVM on super-large language models.
lipan6461188/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
lipan6461188/e2efold
pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
lipan6461188/icSHAPE_protocol
icSHAPE Protocol
lipan6461188/lineageBuilder
lipan6461188/llama-int8
Quantized inference code for LLaMA models
lipan6461188/moses
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
lipan6461188/Notes
lipan6461188/PARIS
This is a python/c++ version PARIS pipeline
lipan6461188/parseGTF
A Qt Project to Parse GTF and Genome Files
lipan6461188/Practical_RL
A course in reinforcement learning in the wild
lipan6461188/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
lipan6461188/SAMWidget
A Qt Project to Process Sam File
lipan6461188/T-ALL-Difference
lipan6461188/TEISER
Integrate my icSHAPE Score into TEISER
lipan6461188/whisper
Robust Speech Recognition via Large-Scale Weak Supervision