lisakmalins

lisakmalins's Stars

• ycphs/openxlsx

  openxlsx - a fast way to read and write complex xslx files

  Language:R22074

• l1xnan/obsidian-better-export-pdf

  Obsidian PDF export enhancement plugin

  Language:TypeScript30017

• csaye/meetingbrew

  A modern way to schedule your meetings.

  Language:TypeScript203

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.3k225

• YuanyueLi/EntropySearch

  Search spectral library with entropy similarity

  Language:JavaScript203

• ablab/npdtools

  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data

  229

• ropensci/webchem

  Chemical Information from the Web

  Language:R16040

• idolawoye/BAGEP

  A pipeline for Bacterial Whole genome sequence data analysis

  Language:Python132

• AppliedBioinformatics/DiffKAP

  A Differential k-mer Analysis Pipeline

  Language:Perl1

• rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes

  Language:C++547131

• rrwick/Bandage

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++57896

• alekseyzimin/masurca

  Language:M424235

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++27526

• guyleonard/taxdump_edit

  :seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files

  Language:Perl182

• frace/git-passport

  A Git command and hook written in Python to manage multiple Git accounts / user identities.

  Language:Python10925

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.2k542

• bacook17/acronym

  ACRONYM (Acronym CReatiON for You and Me)

  Language:Python38131

• zhangtaolab/Chorus2

  A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).

  Language:Python218

• msadoghi/165a-winter-2020

  Language:Python515

• kramundson/snakemake_chrom_dosage

  Language:R2

• ghaering/pysqlite

  Python DB-API module for SQLite 3.

  Language:C37090

• Santulator/Santulator

  🎁 A Secret Santa draw generator that creates beautiful PDFs for each participant

  Language:Java14226

• selfdefined/web-app

  Dictionary database with future API and bot integrations

  Language:JavaScript572172

• rrwick/Long-read-assembler-comparison

  Benchmarking of long-read assembly tools for bacterial whole genomes

  Language:Python16914

• jnmaloof/HamiltonDemos

  Language:R11

• marbl/canu

  A single molecule sequence assembler for genomes large and small.

  Language:C++653179

• rrwick/August-2019-consensus-accuracy-update

  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies

  Language:Python566

• davidebolo1993/NanoR

  Nanopore data analysis in R

  Language:R3810

• kramundson/potato-mapping

  snakemake pipeline for fastq to vcf

  Language:Python31

• vsbuffalo/bds-files

  Supplementary files for my book, "Bioinformatics Data Skills"

  Language:Python600356