liu-congcong/GeneSequence

GeneSequence

Generate processed RNA sequences, CDS sequences and translated protein sequences of all transcripts.

Installation

git clone https://github.com/liu-congcong/GeneSequence.git
cd GeneSequence
make && make clean

Usage

• Transcript sequences

GeneSequence -fasta FASTA -gff GFF -type transcript > TRANSCRIPT.FASTA

• CDS sequences

GeneSequence -fasta FASTA -gff GFF -type cds > CDS.FASTA

• Protein sequences

GeneSequence -fasta FASTA -gff GFF -type protein > PROTEIN.FASTA