liu-wq
Student, bioinformatics, genomics
INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCESBeijing, China
Pinned Repositories
assemblage
Tools for working with second gen assemblies, fasta sequences, etc
Cpp-0-1-Resource
C++ 匠心之作 从0到1入门资料
EasyMicrobiome
Scripts and databases for amplicon and metagenome
EVEE-Tools
EVEE-Tools is a suite of scripts for analyzing expression evolution across species.
expressionML
ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
GEO
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
interspecific_rnaseq
ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
liu-wq's Repositories
liu-wq/expressionML
liu-wq/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
liu-wq/ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
liu-wq/assemblage
Tools for working with second gen assemblies, fasta sequences, etc
liu-wq/Cpp-0-1-Resource
C++ 匠心之作 从0到1入门资料
liu-wq/EasyMicrobiome
Scripts and databases for amplicon and metagenome
liu-wq/EVEE-Tools
EVEE-Tools is a suite of scripts for analyzing expression evolution across species.
liu-wq/ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
liu-wq/GEO
liu-wq/interspecific_rnaseq
liu-wq/killigenomics
Killifish genomics scripts
liu-wq/learnnote
Bioinformatics
liu-wq/liu-wq.github.io
liu-wq/MAKER-genome-annotations-tutorial
Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
liu-wq/Methylation_Analysis
Learn methylation
liu-wq/mixr
MIXR: Mismatching Isoform eXon Remover
liu-wq/polysel
Pipeline to detect polygenic selection in gene sets
liu-wq/Reg_Evo_Primates
This is a GitHub repo for a project studying gene expression and methylation in humans, chimpanzees, and rhesus macaques. The website of this work can be found at:
liu-wq/Regulatory_Evol
The website with the results can be found at https://lauren-blake.github.io/Regulatory_Evol/analysis/
liu-wq/rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).