liudongliangHI

acid-amine-enumeration

Code for Acid Amine Enumeration Paper

advancesyntoolkit

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

ai_notes

machine learning/artificial intelligence notes

amazon-sagemaker-examples

Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker

bigg-docker

bigg_models

The BiGG Models website server

bigg_models_data

The flat files for the BiGG Models website

BIOLITMAP

Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.

biostat_final_exam

biostat final exam data and code

Kuakua

GoodJob!You Deserve It!——A thesis compliments platform 干得好!这是你应得的!——一个论文夸夸平台

liudongliangHI/biostat_final_exam

biostat final exam data and code

liudongliangHI/Kuakua

GoodJob!You Deserve It!——A thesis compliments platform 干得好!这是你应得的!——一个论文夸夸平台

liudongliangHI/BT2100

BT2100 - Computational Biotechnology

liudongliangHI/cameo

cameo - computer aided metabolic engineering & optimization

liudongliangHI/ConPLex

Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.

liudongliangHI/crem

CReM: chemically reasonable mutations framework

liudongliangHI/DeepClustering

Methods and Implements of Deep Clustering

liudongliangHI/DeepDTAF

a deep learning architecture for protein-ligand binding affinity prediction

liudongliangHI/DLKcat

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

liudongliangHI/enz-pred

liudongliangHI/enzyme-datasets

Enzyme datasets used to benchmark enzyme-substrate promiscuity models

liudongliangHI/escher

Build, share, and embed visualizations of metabolic pathways.

liudongliangHI/FINDER

FINDER - FInding key players in complex Networks through DEep Reinforcement learning (Nature Machine Intelligence)

liudongliangHI/FSL-Mate

FSL-Mate: A collection of resources for few-shot learning (FSL).

liudongliangHI/FusionDTA

liudongliangHI/GLN

Implementation of Retrosynthesis Prediction with Conditional Graph Logic Network

liudongliangHI/GVP-MSA

liudongliangHI/kinase-cpi-reanalysis

Reanalysis of Hie et al. using uncertainty paper

liudongliangHI/KM_prediction_function

liudongliangHI/Knowledge-Graph-And-Visualization-Demo

There are 2D-Search and 3D-Graph-View for knowledge graph visualization.

liudongliangHI/mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

liudongliangHI/metabolic-ninja

Predict heterologous pathways for the given organism and chemical of interest

liudongliangHI/powerful-gnns

How Powerful are Graph Neural Networks?

liudongliangHI/Project

liudongliangHI/ProLIF

Protein-Ligand Interaction Fingerprints

liudongliangHI/reframed

ReFramed: metabolic modeling package

liudongliangHI/retrosynthesis_planner

Retrosynthesis planner

liudongliangHI/subwayMap

A jquery plugin to render data as a subway map visualization

liudongliangHI/teachopencadd

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

liudongliangHI/TransPHLA-AOMP