Pinned Repositories
AFQ
Automated Fiber Quantification
ANTs
Advanced Normalization Tools (ANTs)
BrainCovarianceConnectToolkitV2.1
BCCTv2.1
Bru2Nii
Bruker ParaVision to NIfTI conversion
bruker2nifti
Medical image format converter: from raw Bruker ParaVision to nifti.
BrukerGUI
Library and GUI for the Bruker data processing
brukerMRI
Python module to handle Bruker Paravision MRI files (parameter files, raw data, processed data).
chaos-theory
CUBIC_nprot
Code for the image processing and analysis described our Nature Protocols paper.
Deep_MRI_brain_extraction
3D convolutional neural network for MRI brain extraction
liunaici's Repositories
liunaici/AFQ
Automated Fiber Quantification
liunaici/ANTs
Advanced Normalization Tools (ANTs)
liunaici/BrainCovarianceConnectToolkitV2.1
BCCTv2.1
liunaici/Bru2Nii
Bruker ParaVision to NIfTI conversion
liunaici/bruker2nifti
Medical image format converter: from raw Bruker ParaVision to nifti.
liunaici/BrukerGUI
Library and GUI for the Bruker data processing
liunaici/brukerMRI
Python module to handle Bruker Paravision MRI files (parameter files, raw data, processed data).
liunaici/chaos-theory
liunaici/CUBIC_nprot
Code for the image processing and analysis described our Nature Protocols paper.
liunaici/Deep_MRI_brain_extraction
3D convolutional neural network for MRI brain extraction
liunaici/dicomifier
Convert data from Bruker to DICOM and from DICOM to NIfTI
liunaici/MouseBrainAtlas
A system for building mouse brain atlas from histology series and automated alignment to atlas
liunaici/mousemorph
Tools for MRI mouse brain morphometry
liunaici/NiftyNet
An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
liunaici/NiftyReg_Loop_Bash
Running NiftyReg in for-loop in MacOS/Unix environment using BASH script.
liunaici/NiftyReg_Loop_BAT
Running NiftyReg in for-loop using Batch in Windows environment. I highly discourage to install NiftyReg in Windows. Apparently the installation requires Framework 4.0 and older version of Visual Studio (2010?). But the current Windows system (as of May 2016 Framework 4.5) does not support the old library and keeps on rewriting to newer Framework.
liunaici/NiftySeg
liunaici/seaborn
Statistical data visualization in Python
liunaici/seaborn-data
Data repository for seaborn examples