liuqian666

liuqian666's Stars

• bluenote-1577/skani

  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

  Language:Rust18211

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python55370

• GaryBikini/ChinaAdminDivisonSHP

  **行政区划矢量图，ESRI Shapefile格式，共四级：国家、省/直辖市、市、区/县。关键字：**行政区划图；**地图；**行政区；**行政区地图；行政区地图；行政区；行政区划；地图；矢量数据；矢量地理数据；省级；直辖市；市级；区/县级；行政区划图。

  671118

• simp37/South_Africa_GeoJSON

  Geojson files of south africa

  72

• georgique/world-geojson

  GeoJson for all the countries, areas (regions) and some states.

  Language:JavaScript35679

• ghoresh11/ecoli_genome_collection

  genome collection and QC scripts for E coli project

  Language:Python8

• A-BN/ClermonTyping

  Clermont PCR method In-Silico

  Language:Python199

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2.1k516

• pianpianyouche/plascad

  Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

  Language:Python5012

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C958287

• AdmiralenOla/Scoary

  Pan-genome wide association studies

  Language:Python18035

• MigleSur/GenAPI

  Gene Absence Presence Identification tool.

  Language:Shell264

• c2-d2/disty

  Disty McMatrixface - compute a distance matrix from a core genome alignment file

  Language:C++141

• egonozer/in_silico_pcr

  Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.

  Language:Perl4012

• tseemann/cgmlst-dists

  🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

  Language:C277

• JoseCoboDiaz/concat_cgMLST_genes

  A ruby script to concatenate cgMLST genes obtained by fast-GeP (https://github.com/jizhang-nz/fast-GeP)

  Language:Ruby21

• MBHallgren/MINTyper

  Language:Python7

• gtonkinhill/rhierbaps

  rhierbaps: R implementation of hierBAPS

  Language:R343

• aineniamh/snipit

  snipit: summarise snps relative to your reference sequence

  Language:Python15328

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.8k597

• xavierdidelot/ClonalFrameML

  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

  Language:C++11227

• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

  873333

• caitiecollins/treeWAS

  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

  Language:R9719

• Momo707577045/m3u8-downloader

  m3u8 视频在线提取工具

  Language:JavaScript6.2k1.2k

• christophergandrud/networkD3

  D3 JavaScript Network Graphs from R

  Language:R654266

• MesquiteProject/MesquiteCore

  The core Mesquite repository

  Language:Java10127

• VirologyCharite/convert-spread3

  A horrible shell script hack to convert SpreadD3 output files for Christian

  Language:JavaScript6

• beagle-dev/beagle-lib

  general purpose library for evaluating the likelihood of sequence evolution on trees

  Language:C++13358

• rxhanson/Rectangle

  Move and resize windows on macOS with keyboard shortcuts and snap areas

  Language:Swift26.5k802

• CompEvol/beast2

  Bayesian Evolutionary Analysis by Sampling Trees

  Language:Java24583