This is a project to evaluate Embedding Method for task that discovery gene!
You need install BioNEV
you need input youself disease seed gene(some gene list, it must be csv file) to the input dir
you can get the seed list form autoseed, opentarget and pubmed
Of course, you can use yourself ppi network replace ours, you replace the ppi.csv path in the process.ipynb
run the process.ipynb cell you can get a eval and result dir
the eval dir is save the evalution about different embedding method
the result dir is save the predict result from different embedding method