liuwuping

liuwuping's Stars

• alexsosn/iOS_ML

  List of Machine Learning, AI, NLP solutions for iOS. The most recent version of this article can be found on my blog.

  1.4k952154

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k351.1k230

• pnnl/HyperNetX

  Python package for hypergraph analysis and visualization.

  Language:Python549216492

• BatzoglouLabSU/SIMLR

  Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207

  Language:MATLAB108165260

• saezlab/OmnipathR

  R client for the OmniPath web service

  Language:R105109720

• LocasaleLab/Single-Cell-Metabolic-Landscape

  Pipeline for exploring metebolic heterogeneity at single-cell resolution

  Language:R712049

• RASpicer/MetabolomicsTools

  5512721

• jorainer/metabolomics2018

  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.

  Language:HTML266112

• eMetaboHUB/MS-CleanR

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• ISA-tools/Risa

  Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).

  Language:R207149

• ualr-Rgroup/metabolomics-in-r

  Supporting material for "Processing and visualization of metabolomics data using R"

  Language:R185010

• tengfei-emory/scBatch

  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment

  Language:R17179

• rformassspectrometry/CompoundDb

  Creating and using (chemical) compound databases

  Language:R16107516

• DorresteinLaboratory/XCMS3_FeatureBasedMN

  Language:Jupyter Notebook12659

• gggraca/MetaboAnnotatoR

  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets

  Language:R12435

• stanstrup/PeakABro

  Peaklist Annotator and Browser

  Language:R85131

• htpusa/moomin

  MOOMIN is a tool for analysing differential expression data

  Language:MATLAB7000

• WenminWang15/HCM_Nat-Cardiovasc-Res

  Predicting the survival outcomes of HCM patient using Random Survival forests（RSF）

  Language:Jupyter Notebook6113

• andgan/metabolomics_pipeline

  Pipeline to process UPLC-MS/MS data with XCMS

  5307

• zamboni-lab/RALPS

  Regularised adversarial learning for batch normalization. Copy of original repo https://github.com/dmitrav/normalization

  Language:Python3101

• darciliz/Machine-Learning-with-R-Third-Edition

  Machine-Learning-with-R-Third-Edition, published by Packt

  Language:R2000

• emmagraham/metPropagate

  Language:R2142

• gggraca/MAR

  Metabolomics And nmR toolbox

  Language:R2100

• inambioinfo/chipAnalyseR

  Language:R2201

• wjurkowski/ONION

  Network based integration of transcriptomics and metabolomics data

  Language:R25325

• abhorrentPantheon/ma-bioinformatics

  Automatically exported from code.google.com/p/ma-bioinformatics

  Language:R100

• jaspershen/smartD

  All the code for smartD project

  Language:R140

• LiesaSalzer/masstrixR

  masstrixR - Annotation tools for MS-based metabolomics

  Language:R1000

• TalWac/XCMS

  XCMS code

  Language:R1100

• zamboni-lab/MNS

  Toolbox for Metabolic Network Segmentation

  Language:MATLAB1000