saezlab/OmnipathR

Issues

• Orthology translation does not work: `oma_pairwise` fails with HTTP 503

  #100 opened 2 months ago by ZZQ-1117
  8

• Error in get_collectri()

  #99 opened 3 months ago by virdzek-g
  0

• Clarification about commercial licenses

  #87 opened 9 months ago by InesdeSantiago
  3

• wrong TGFB1-SMAD7 interaction

  #98 opened 4 months ago by adugourd
  0

• Installation error

  #96 opened 5 months ago by ndrubins
  3

• import_all_interactions only shows transcriptional

  #91 opened 5 months ago by mschubert
  2

• Omnipath failing to install in GitHub actions.

  #95 opened 5 months ago by enblacar
  1

• Error: Error installing package 'OmnipathR': when trying to install LianaR

  #94 opened 5 months ago by maximelepetit
  4

• cannot open the connection to 'https://omnipathdb.org/resources'

  #93 opened 6 months ago by jtorrejon81
  2

• connection problem

  #92 opened 6 months ago by ojikj2019
  2

• loading package failed

  #90 opened 7 months ago by Kiliankleemann
  1

• Error when Testing the pipeline

  #89 opened 8 months ago by Mirable8me
  3

• TIME OUT for import_intercell_network

  #88 opened 9 months ago by howtofindme
  6

• Error in retrieving interactions from Omnipath

  #79 opened 9 months ago by EugeniaRadulescu
  5

• error when run import_omnipath_annotations

  #86 opened 9 months ago by FADHLyemen
  1

• CellPhoneDB Version

  #85 opened 9 months ago by SimonDMurray
  2

• How to get information about downstream target genes of ligands and receptors in cell interactions?

  #77 opened a year ago by qijt123
  2

• Error Installing OmnipathR when trying to install liana

  #80 opened 9 months ago by rstorch01
  1

• Utilize Omnipath to construct a subset of high-confidence cancer PPI network for downstream network analysis approaches

  #51 opened 9 months ago by Jasonmbg
  5

• Wrong version packages

  #72 opened 9 months ago by Icekirakira
  1

• How to get data on the interactions of all receptor ligands?

  #75 opened 9 months ago by qijt123
  4

• Vinayagam et al. suppl: download fails from sciencemag due to lack of cookie

  #76 opened a year ago by j-bac
  0

• Unable to install LIANA because of omnipathr dependency

  #78 opened 9 months ago by joan-yanqiong
  2

• get_collectri() and OmnipathR download not working

  #84 opened 10 months ago by nvokes
  4

• omnipathdb has expired certificate

  #82 opened 10 months ago by hrehrauer
  1

• CDK6 -> RUNX1 interaction should be consensus inhibition

  #83 opened 10 months ago by adugourd
  0

• PDPK1 and PDK1 are mixed up

  #81 opened 10 months ago by adugourd
  0

• genes lost in orthology_translate_column

  #74 opened a year ago by gabora
  3

• Omnipath database

  #73 opened a year ago by chrkuo
  1

• error in homology_translate

  #71 opened a year ago by gabora
  1

• error in dplyr mutate function within get dorothea during omnipath

  #70 opened a year ago by narmadabc
  3

• OmnipathR.rdb' is corrupt

  #69 opened a year ago by hemantgujar
  2

• Error in get_dorothea

  #68 opened a year ago by DylanPostmus
  6

• kegg_pathway_download function not working

  #53 opened a year ago by Kamalika17
  3

• CancerDrugsDB - no genes names

  #52 opened a year ago by kaupuks
  1

• OmniPath Interactions Sources

  #64 opened a year ago by tam022
  1

• object ‘homologene_download’ is not exported by 'namespace:OmnipathR'

  #65 opened a year ago by skylarsiwu0113
  1

• Collectri not found

  #67 opened a year ago by joan-yanqiong
  1

• OmnipathR import functions mutate error

  #66 opened a year ago by D-Harouni
  1

• Bug in newest R versions

  #56 opened a year ago by demian1
  4

• PPI resources in omnipath

  #59 opened a year ago by cgeyskens
  2

• Building NicheNet PK with error

  #63 opened a year ago by dbdimitrov
  1

• Import Dorothea interactions not working

  #62 opened a year ago by smuellerd
  3

• error in 'map()' OmniPathR

  #61 opened a year ago by EAbBcn
  2

• error in `n_references`: arguments in `...` must be passed by position, not name

  #57 opened a year ago by adugourd
  2

• `hpo_download` throws exception in `mutate` due to `dbl` type columns

  #60 opened a year ago by deeenes
  1

• Installation errors for windows

  #54 opened a year ago by PauBadiaM
  4

• Intallation Issue with YAML file

  #58 opened a year ago by cchen22
  1

• Problem with downloading enzub particular database

  #55 opened a year ago by kaupuks
  1

• get Ramilowski2015 interaction dataset from omnipath

  #50 opened a year ago by jinyuanchun
  1