pathways
There are 92 repositories under pathways topic.
IngoScholtes/pathpy
pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
saezlab/OmnipathR
R client for the OmniPath web service
mahmoodlab/SurvPath
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
igordot/msigdbr
MSigDB gene sets for multiple organisms in a tidy data format
Caleydo/caleydo
Caleydo - Visualization for Molecular Biology
iVis-at-Bilkent/pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
iVis-at-Bilkent/newt
A web application to visualize and edit pathway models
geneontology/noctua
Graph-based modeling environment for biology, including prototype editor and services
JuliaOcean/AIBECS.jl
The ideal tool for exploring global marine biogeochemical cycles.
iVis-at-Bilkent/sbgnviz.js
A web based visualization tool for process description maps in SBGN
PathwayAndDataAnalysis/causalpath
A project for exploring differentially active signaling paths related to proteomics datasets
Caleydo/pathfinder
Pathfinder is a tool for the visual exploration of paths in large graphs.
decodebiology/geneSCF_inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
jdrudolph/photon
PHOsphoproteomic dissecTiOn using Networks
PathwayMerger/PathMe
Harmonizing pathway databases using Biological Expression Language (BEL)
iVis-at-Bilkent/chise.js
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
llrs/BioCor
Package to calculate functional similarity between genes https://biocor.llrs.dev
wikipathways/rWikiPathways
R package for WikiPathways API
bio2bel/kegg
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
ComPath/ComPath
A web application for exploring, analyzing, and curating pathway databases
iVis-at-Bilkent/syblars
SyBLaRS: Systems Biology Layout & Rendering Service
dethebera/100-days-of-Data-Science
This is the complete module you will need to get started with 100 days of Data Science by 100 days Official.
greenelab/tad_pathways_pipeline
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
awell-health/developer-hub
Awell's Developer Hub website.
geneontology/noctua-models
This is the data repository for the models created and edited with the Noctua tool stack for GO.
nhsx/SynPath
Proof Of Concept - Open Patient Pathway Generator using and an agent based approach
ComPath/compath-resources
This repository contains the different resources derived or generated using ComPath
geneontology/pathways2GO
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
ps4dr/ps4dr
Pathway Signatures for Drug Repositioning and Discovery
rosscm/fedup
:fishing_pole_and_fish: Bioconductor package for pathway enrichment and depletion analysis via a Fisher's exact test on custom test sets and annotations
PathwayAnalysisPlatform/PathwayMatcher_Dev
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
PathwayMerger/PathMe-Viewer
A web application for visualizing and exploring pathway knowledge in Biological Expression Language (BEL)
bio2bel/reactome
Integration of pathway-related information from Reactome in BEL
geneontology/gocam-sif-pyexport
Export GO-CAMs to SIF (Python)
sales-lab/graphite
GRAPH Interaction from pathway Topological Environment
TheVikJ/PHC-website
The official Pathways Hack Club website