wikipathways/rWikiPathways

Issues

• How to extract just metabolic subset of genes?

  #34 opened 4 months ago by avelar-ageing
  3

• getXrefList(...) method is broken

  #30 opened a year ago by OliveIsLazy
  14

• downloadPathwayArchive() not working

  #24 opened 9 months ago by AlexanderPico
  3

• get push rights in the BioC repo

  #32 opened a year ago by egonw
  3

• how to metabolite enrichment analysis

  #29 opened 2 years ago by qqwxp
  1

• update pathway analysis vignette

  #28 opened 2 years ago by AlexanderPico
  0

• Error in function (type, msg, asError = TRUE) : SSL certificate problem: certificate has expired

  #26 opened 2 years ago by duanxiaoqian
  4

• https for downloadPathwayArchive

  #27 opened 2 years ago by AlexanderPico
  0

• igraph compatible?

  #25 opened 2 years ago by emantzo
  1

• Procedure to remove getColoredPathway function

  #11 opened 3 years ago by AlexanderPico
  2

• Add emap section to PathwayAnalysis vignette

  #18 opened 3 years ago by AlexanderPico
  1

• Link to BridgeDb datasource list in documentation is wrong

  #19 opened 3 years ago by mkutmon
  2

• downloadPathwaysArchive doesn't work with redirects

  #22 opened 3 years ago by AlexanderPico
  0

• GMT parsing is missing

  #16 opened 4 years ago by AlexanderPico
  3

• proper acknowledgement

  #17 opened 4 years ago by GuangchuangYu
  2

• loading of BridgeDbR does not happen authomatically when using getXrefList()

  #13 opened 4 years ago by egonw
  1

• commit 2ba575e338706e1c6ffa7707e7d10ff78839e71a undid earlier fixes

  #14 opened 4 years ago by egonw
  2

• How to extract edges from GPML file ?

  #10 opened 4 years ago by Krithika-Bhuvan
  2

• findPathwaysByText should return data.frame rather than list?

  #7 opened 4 years ago by kozo2
  1

• Add R function to highlight genes by name/ID rather than graphID

  #6 opened 4 years ago by AlexanderPico
  1

• `getColoredPathway` should recognize if the remote API method is offline

  #9 opened 4 years ago by egonw
  4

• migrate away from RJSONIO to rjson

  #8 opened 5 years ago by egonw
  2

• downloadPathwayArchive requires XML

  #4 opened 5 years ago by AlexanderPico
  0

• Add method to retrieve gmt files

  #3 opened 6 years ago by AlexanderPico
  1

• getXrefList does not work correctly for WP3620

  #2 opened 6 years ago by kozo2
  3

• Multiple colored nodes are not supported

  #1 opened 6 years ago by shivangi1787
  2