egonw

Open scientist teaching and doing research at Maastricht University.

@BiGCAT-UMMaastricht, The Netherlands

Pinned Repositories

BridgeDb
The BridgeDb Library source code
Language:Java28 13 13921
cdk
The Chemistry Development Kit
Language:Java502 40 292162
bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
Language:Java14 5 595
cdkbook
Groovy Cheminformatics with the Chemistry Development Kit
Language:Groovy41 5 2611
chembl.rdf
Scripts to create RDF for ChEMBL.
Language:PHP15 3 333
genalg
Language:R16 5 57
jqudt
Java library for working with the QUDT ontology and data using it.
Language:Java14 5 48
rrdf
R package for handling RDF data.
Language:R29 7 4211
SARS-CoV-2-Queries
Wikidata Queries around the SARS-CoV-2 virus and pandemic
Language:Groovy9 2 208
rWikiPathways
R package for WikiPathways API
Language:HTML15 15 296

egonw's Repositories

egonw/bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
Language:Java14 5 595
egonw/BridgeDbR
BIoconductor R package for BridgeDb
Language:R5 4 59
egonw/compact-ids-in-reports
Write up on how to use compact identifiers in project reports.
5 1 33
egonw/wikidata-chemistry
Cache of Chemistry in Wikidata
5 3 01
egonw/ons-wikidata
Open Notebook for Wikidata scripts
Language:Groovy3 2 83
egonw/BridgeDb
Language:Java2 2 01
egonw/cdk
The Chemistry Development Kit
Language:Java1 2 01
egonw/scholia
Wikidata scholarly profile
Language:JavaScript1 3 01
egonw/bacting-bioclipse
Bioclipse libraries for use in Bacting.
Language:Java1 1
egonw/BioHackEU24_preprint
egonw/bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
Language:Python1 0
egonw/blog
Source of the chem-bla-ics blog
Language:SCSS2 0
egonw/blog2
Language:SCSS2 11
egonw/cdk-rest-api-template
Language:Java
egonw/chembl2ctl
Repository with things to create CyTargetLinker files for ChEMBL
1
egonw/commons-dws-public
COMMONS Lab Public Dendron Workspace
Language:JavaScript1 0
egonw/egonw
2 0
egonw/glossary
Webpage with the VHP4Safety Glossary
Language:Groovy1 0
egonw/hpa-qlever
QLever files for the Human Protein Atlas RDF
Language:Groovy
egonw/JMolecularEnergy
JME is a Java library for calculating force fields, molecular dynamics, and QSAR, designed for easy integration into scientific applications.
egonw/marimo
A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.
egonw/Mastodon-OpenScience
Tool to bulk follow accounts related Open Science on Mastodon. Runs at https://germanrepro.github.io/Mastodon-OpenScience/ Based on the DIY webapp to bulk follow sociological accounts on Mastodon by David Adler, Thomas Haase & Hendrik Erz.
egonw/nodes4knime
KNIMES nodes using the CDK library.
egonw/pathvisio-book
:book: PathVisio
Language:HTML
egonw/pyBiodatafuse
Python package for biodatafuse project.
Language:Python1 0
egonw/snapquery
Frontend to Introduce Named Queries and Named Query Middleware to wikidata
egonw/sparql-examples-utils
A tool to maintain and test your SPARQL examples
egonw/test-scholia-ttl
egonw/tmap
A very fast visualization library for large, high-dimensional data sets.
egonw/Transform-to-Open-Science
Transformation to Open Science