egonw
Open scientist teaching and doing research at Maastricht University.
@BiGCAT-UMMaastricht, The Netherlands
Pinned Repositories
BridgeDb
The BridgeDb Library source code
cdk
The Chemistry Development Kit
bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
cdkbook
Groovy Cheminformatics with the Chemistry Development Kit
chembl.rdf
Scripts to create RDF for ChEMBL.
genalg
jqudt
Java library for working with the QUDT ontology and data using it.
rrdf
R package for handling RDF data.
SARS-CoV-2-Queries
Wikidata Queries around the SARS-CoV-2 virus and pandemic
rWikiPathways
R package for WikiPathways API
egonw's Repositories
egonw/acsrdf2010
owl:thing's for the ACS RDF symposium in August 2010 in Boston
egonw/java-rdfa
RDFa Parser for java
egonw/awesome-computational-biology
Awesome list of computational biology.
egonw/awesome-research-software-registries
Awesome list of Research Software Registries
egonw/booktools
egonw/catalog
This repository holds a catalog of identification resources, complete with bibliographical metadata and metadata on the type of key, the taxon/taxa it distinguishes, the geographical region it applies to, and the intended completeness.
egonw/ChemDisGene
Bio relation extraction labeled dataset
egonw/chemViz2
Cheminformatics App for Cytoscape 3
egonw/CombiFF
CombiFF: automatized force-field optimization by the CSMS group at ETH Zürich
egonw/cookbook-dev
holds https://fairplus.github.io/cookbook-dev -- don't put anything here, this is holding a copy of the dev branch of the-fair-cookbook for live online view
egonw/cytargetlinker.github.io
CyTargetLinker website and tutorials
egonw/Dataset_Recommendation_using_ensemble_approach-CoAuthor-
egonw/DOIPrefixAnalysis
List of CrossRef DOI prefixes augmented with semantic information about their holders from Wikidata
egonw/duckpy
A simple Python library for searching on DuckDuckGo.
egonw/labra.github.io
Labra's home page
egonw/linksetCreator
Scripts to create and update RegIN files used by CyTargetLinker from tab files
egonw/markdown-jcheminf
This repository contains a Markdown template for Research type articles for the Journal of Cheminformatics.
egonw/MetabolomicsGWAS_INTERVAL_EPICNorfolk
This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemical individuality and their effects on human health"
egonw/minerva2rdf
Code base to convert Minerva models to WikiPathays WPRDF.
egonw/mirbase-id-mapping
egonw/ontorxn
Chemical reaction network knowledge graphs: the OntoRXN ontology (copy of https://gitlab.com/dgarayr/ontorxn)
egonw/OSSRH-82056
verifying nanojava
egonw/pathvisio-book
:book: PathVisio
egonw/pathvisio4-ant
egonw/pyorcidator
egonw/SesameOpenScience_site
SesameOpenScience website - created with Hugo Apero
egonw/tmap
A very fast visualization library for large, high-dimensional data sets.
egonw/toxhub-python
Python library to interface with eTransafe ToxHub services
egonw/WPEnrichmentTool
A tool to perform pathway enrichment analysis on differential gene expression contrasts using WikiPathways pathways
egonw/xom
XOM™ is a new XML object model. It is an open source (LGPL), tree-based API for processing XML with Java that strives for correctness, simplicity, and performance, in that order.