egonw
Open scientist teaching and doing research at Maastricht University.
@BiGCAT-UMMaastricht, The Netherlands
Pinned Repositories
BridgeDb
The BridgeDb Library source code
cdk
The Chemistry Development Kit
bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
cdkbook
Groovy Cheminformatics with the Chemistry Development Kit
chembl.rdf
Scripts to create RDF for ChEMBL.
genalg
jqudt
Java library for working with the QUDT ontology and data using it.
rrdf
R package for handling RDF data.
SARS-CoV-2-Queries
Wikidata Queries around the SARS-CoV-2 virus and pandemic
rWikiPathways
R package for WikiPathways API
egonw's Repositories
egonw/cito-update
egonw/jats
Repository with JATS of J.Cheminform. CC-BY articles
egonw/vleermuis
This repository contains the BASIC source code published 1989 for a simple game.
egonw/xenobiotic-metabolism
Collection of pathways related to xenobiotic metabolism
egonw/bhxiv-gen-pdf
Generate a PDF for BioHackrXiv.org
egonw/bhxiv-gen-pdf-template
egonw/biohackeu22-project26
egonw/citeulike-export
BibTeX exports of the 'egonw' account on CiteULike.
egonw/cito
Support for the Citation Typing Ontology (CiTO)
egonw/commons-dws-public
COMMONS Lab Public Dendron Workspace
egonw/CompTox-PFASHalfLife
egonw/cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
egonw/docker
BridgeDb Docker
egonw/inara
Tools to create JOSS/JOSE publishing artifacts
egonw/Interactive-Enrichment-Analysis
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
egonw/lipidomics
Informatics software and tools for lipidomics
egonw/lotus-wikidata-interact
egonw/Machine-learning-meets-pKa
egonw/mermaid-test
egonw/MSMetaEnhancer
Tool for mass spectra metadata annotation.
egonw/nanowiki
egonw/OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
egonw/onglai-classify-homologues
OngLai: A cheminformatics algorithm to classify homologous chemical series
egonw/open-data
egonw/RDF-syntax-check
GH action that validates the syntax of all RDF files in the repository
egonw/rsr
An R client for sysrev.com
egonw/swat4hcls-2023--custom-scholia
SWAT4HCLS 2023 Project 'Hacking Scholia for custom SPARQL end points'
egonw/SWAT4HCLS2022-ChEMBL-bioschemas-mapping
Hackathon project aims at mapping the ChEMBL RDF small molecules, proteins and taxons onto Bioschemas.org entities and produce the corresponding JSON-LD
egonw/tmp
tmp repository
egonw/wikicards
GeneCards, but with Wikidata