bridgedb/BridgeDb

Issues

• request for adding this species: Solanum tuberosum

  #244 opened 5 months ago by egonw
  0

• Java8 compile fail

  #245 opened 5 months ago by egonw
  1

• Have the QC tool report on metadata alignment with DataCite

  #243 opened 7 months ago by egonw
  1

• wrong Xref from Bioregistry compact identifier

  #240 opened 9 months ago by egonw
  4

• Update nodejs

  #242 opened 9 months ago by youphendriks
  1

• subdomain has been hacked?

  #234 opened a year ago by kielnevec
  1

• factor out plugins into separate repositories

  #229 opened a year ago by egonw
  0

• Release BridgeDb Java with the new UniProtKB full name

  #228 opened a year ago by egonw
  1

• Update the BridgeDb Java code to match the new tests

  #226 opened a year ago by egonw
  0

• Write the BridgeDb java unit tests

  #225 opened a year ago by egonw
  1

• Define the expected BridgeDb Java behavior

  #224 opened a year ago by egonw
  1

• AbstractResolverTest.java class

  #214 opened a year ago by hbasaric
  3

• Integrating information from AlphaFold

  #175 opened 3 years ago by NuriaQueralt
  2

• counting primary and secondary identifiers in the QC is ridiculously slow

  #221 opened a year ago by egonw
  1

• QC fails when comparing a schema 3 with a schema 4 database

  #220 opened a year ago by egonw
  1

• Tool to convert a Derby file to a SSSOM file

  #222 opened a year ago by egonw
  0

• write Software Management Plan

  #171 opened 2 years ago by egonw
  3

• QC: test mapping files for expected databases

  #218 opened 2 years ago by DeniseSl22
  3

• Derby Properties should report which data source provides attributes

  #186 opened 3 years ago by egonw
  0

• we want more sheep

  #217 opened 2 years ago by egonw
  1

• describe data models on the website

  #216 opened 2 years ago by egonw
  0

• Bug: getBioregistryIdentifier() issue with Chebi identifiers

  #215 opened 2 years ago by hbasaric
  1

• Derby database loading feature

  #185 opened 2 years ago by hbasaric
  1

• Fix bug in DataSourceRegisterTest.java testing class

  #184 opened 2 years ago by hbasaric
  1

• create VoID headers files default when saving and finalizing a Derby database

  #210 opened 2 years ago by egonw
  1

• JavaDoc errors when compiling with Java 17

  #211 opened 2 years ago by egonw
  1

• Update to client driver derby #nwobridgedb

  #207 opened 2 years ago by DeniseSl22
  1

• upgrade openrdf to rdf4j

  #203 opened 2 years ago by egonw
  1

• Test failing org.bridgedb.rdf.identifiers.org.IdentifersOrgReaderTest #nwobridgedb

  #204 opened 2 years ago by DeniseSl22
  0

• Move webservice plugins to separate repositories

  #199 opened 3 years ago by hbasaric
  0

• Move new plugin repositories from hbasaric to bridgedb github

  #200 opened 3 years ago by hbasaric
  1

• Update readme

  #198 opened 3 years ago by DeniseSl22
  0

• put a small test Derby file in the repo

  #187 opened 3 years ago by egonw
  1

• Work through FLOSS Best Practices Criteria and comply to all MUST

  #176 opened 3 years ago by egonw
  0

• report the provenance of the compared files

  #172 opened 3 years ago by egonw
  1

• get OSGi bundles to be uploaded to Maven Central

  #173 opened 3 years ago by egonw
  1

• Function to obtain available data source with the package

  #159 opened 4 years ago by lucas-ubm
  1

• consider coursier to make binaries

  #170 opened 3 years ago by egonw
  0

• java.lang.RuntimeException on groovysh :grab

  #169 opened 3 years ago by kozo2
  0

• Function to get Prefix for Datasource

  #168 opened 4 years ago by mkutmon
  2

• Providing provenance information

  #164 opened 4 years ago by lucas-ubm
  0

• Add contact details to the BridgeDb website

  #160 opened 4 years ago by fehrhart
  0

• Test BridgeDb 3.0 with downstream projects

  #154 opened 4 years ago by egonw
  4

• BridgeDb not working in Cytoscape 3.8.0?

  #151 opened 4 years ago by remizallot
  11

• add Organism.Unspecified

  #157 opened 4 years ago by egonw
  2

• datasources.tsv and other TSV files

  #145 opened 4 years ago by ariutta
  6

• update the Scholia URL pattern

  #153 opened 4 years ago by egonw
  1

• add support for Guide to Pharmacology target identifiers

  #152 opened 5 years ago by egonw
  1

• datasource.txt uses wrong WikiPathways URL scheme

  #144 opened 5 years ago by egonw
  0

• Dig up /xrefBatch/ code

  #141 opened 5 years ago by egonw
  0