Test BridgeDb 3.0 with downstream projects
egonw opened this issue · 4 comments
egonw commented
- PathVisio
- BridgeDbR
- BridgeDb webservice (used by WikiPathways)
- create metabolite ID mapping database
- create gene/protein ID mapping database
egonw commented
Tests with PathVisio (master) look good: PathVisio/pathvisio#163
egonw commented
See also bridgedb/create-bridgedb-genedb#12
egonw commented
I was able to generate GPMLRDF with it, after patching PathVisio Core and WikiPathways API Client. Hardcoding the dependency on Derby 10.5 is essential.
egonw commented
I'm satisfied.