Pinned Repositories
AIMS
AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation
annotation-viewer
Viewer pop-over panel for annotations in JS/HTML environments.
Bioconductor_RCy3_the_new_RCytoscape
Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
bioentities
Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
biothings_explorer
BioThings Explorer: a schema-based client for API interoperability
BridgeDb
The BridgeDb Library source code
bridgedb-app
BridgeDb App for Cytoscape 3
SARS-CoV-2_Alignments
Sequence alignments of SARS-CoV-2 proteins and previously studied proteins
shinyscape
R Shiny UI for Cytoscape
AlexanderPico's Repositories
AlexanderPico/bridgedb-app
BridgeDb App for Cytoscape 3
AlexanderPico/shinyscape
R Shiny UI for Cytoscape
AlexanderPico/AIMS
AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation
AlexanderPico/biothings_explorer
BioThings Explorer: a schema-based client for API interoperability
AlexanderPico/BridgeDb
The BridgeDb Library source code
AlexanderPico/C3-Boot-Camp
Website to organize information and announcements for the UCSF Computational Cancer Community (C3) Boot Camp
AlexanderPico/causalpath_cytoscape_app
AlexanderPico/chemViz2
Cheminformatics App for Cytoscape 3
AlexanderPico/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
AlexanderPico/cykeggparser
AlexanderPico/cyrface
Bridging Cytoscape with R
AlexanderPico/cytocopter
CellNOptR in Cytoscape
AlexanderPico/cytoscape-d3
D3.js support for Cytoscape 3
AlexanderPico/cytoscapeneo4j
Cytoscape plugin for neo4j
AlexanderPico/EnrichmentMapApp
The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
AlexanderPico/grounding-search
A biological entity grounding search service
AlexanderPico/Jiffy
A template Jekyll site with wiki functionality
AlexanderPico/jsbml
JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
AlexanderPico/libGPML
Java library for reading / writing GPML files
AlexanderPico/pathvisio-book
:book: PathVisio
AlexanderPico/pending.api
Set of standalone APIs built with the BioThings SDK for the Translator Project
AlexanderPico/pfocr-files
AlexanderPico/PhosphoPath
AlexanderPico/playground-database
AlexanderPico/pmcfigurebot
Query figures indexed by PubMed Central and collect metadata
AlexanderPico/retrondb-notebooks
Python notebooks for retrondb transactions
AlexanderPico/sandbox-wp-db
Playground for new GPML processing and curation
AlexanderPico/shiny-publications
RShiny app to browse a set of papers
AlexanderPico/TestRepo
AlexanderPico/vital-cytoscape
vital endpoint plugin for cytoscape