downloadPathwayArchive not working
Closed this issue · 1 comments
Jorges1000 commented
Hi,
I get this error:
rWikiPathways::downloadPathwayArchive(organism="Homo sapiens")
Error in rWikiPathways::downloadPathwayArchive(organism = "Homo sapiens") :
Could not find a file matching your specifications. Try browsing https://data.wikipathways.org.
sessionInfo
R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 18.04.6 LTS
Matrix products: default
BLAS: /shared/apps/R/4.4.1/lib/R/lib/libRblas.so
LAPACK: /shared/apps/R/4.4.1/lib/R/lib/libRlapack.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8
[6] LC_MESSAGES=C.UTF-8 LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C
time zone: Etc/UTC
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.7.1
Thanks!
AlexanderPico commented
Fixed in development branch. You can install it like so...
install.packages("devtools")
library(devtools)
install_github('wikipathways/rWikiPathways', build_vignettes=TRUE)
library(rWikiPathways)
The fix will be included in the upcoming Bioconductor release in October.
Thanks for reporting!