geneontology/noctua-models

Issues

• Explore SGD's pre-import and post-import GPADs to understand the origin of the 10% annotation increase

  #271 opened 4 months ago by kltm
  16

• Tests no longer work for noctua-models

  #268 opened 5 months ago by kltm
  3

• two models with same ontology IRI

  #265 opened 6 months ago by balhoff
  2

• Great job with your model, Seth!! (ref: gomodel:653b0ce600000000)

  #264 opened 7 months ago by vanaukenk
  0

• Fix Travis checks

  #144 opened 4 years ago by kltm
  3

• util/collate-gpads.pl too verbose

  #242 opened 2 years ago by kltm
  2

• remove special characters on file names. Cannot clone on windows

  #236 opened 2 years ago by tmushayahama
  1

• Fixing SynGO models for P2GO/QuickGO compatible GPAD export

  #102 opened 6 years ago by dosumis
  7

• rewrite obsoletion replacement comments to use CURIEs

  #229 opened 2 years ago by balhoff
  0

• Lets add the reactome models into the master collection

  #163 opened 2 years ago by goodb
  1

• Bulk update the models to get add initial default tag(s) and value(s) for causal models

  #216 opened 2 years ago by kltm
  0

• Load remaining ZFIN Models into noctua

  #170 opened 3 years ago by sierra-moxon
  14

• In noctua-model TTLs, change all ORCIDs used for GO from HTTP to HTTPS

  #194 opened 3 years ago by kltm
  2

• Update README with SOP for master and dev maintenance

  #199 opened 3 years ago by kltm
  0

• Help, annotation switches to a different process than specified-> (ref: gomodel:60e7989d00000085)

  #197 opened 3 years ago by ValWood
  1

• fix travis build

  #180 opened 3 years ago by sierra-moxon
  0

• migrate travis build to github actions

  #181 opened 3 years ago by sierra-moxon
  0

• Consistence Date Format for models (sorting problems)

  #174 opened 3 years ago by tmushayahama
  1

• Malformed individual IRIs

  #164 opened 3 years ago by balhoff
  0

• remove models with redundant IRIs

  #158 opened 4 years ago by goodb
  3

• consider removal of go-lego import statement

  #143 opened 4 years ago by goodb
  1

• Noctua issues

  #150 opened 4 years ago by ValWood
  1

• Entire set of GO-CAM models

  #147 opened 4 years ago by eranbio
  2

• "enabled by information biomacromolecule (CHEBI:33695)" is automatically added (ref: gomodel:5dd88cab00000142)

  #133 opened 5 years ago by sabrinatoro
  1

• collate-gpads.pl should take an argument/option to set the output directory

  #126 opened 5 years ago by dougli1sqrd
  1

• Update Sabrina's group in existing models to "ZFIN"

  #96 opened 6 years ago by balhoff
  3

• Annotating regulation and making regulation_of terms on the fly -> (ref: gomodel:59dc728000000324)

  #50 opened 5 years ago by BarbaraCzub
  14

• Please make these models sticky

  #110 opened 5 years ago by belenjc
  1

• Apply SPARQL update to add missing providedBy annotations (redux 01)

  #101 opened 6 years ago by kltm
  1

• Possible issues with the latest SynGO model batch

  #55 opened 6 years ago by kltm
  22

• MOD specific files no longer produced by 'export-lego-to-gpad-sparql' Jenkins job.

  #94 opened 6 years ago by malcolmfisher103
  5

• Form view does not correspond to graph editor view -> (ref: gomodel:5ae3b0f600000604)

  #95 opened 6 years ago by BarbaraCzub
  3

• Remove lingering JSON blobs

  #92 opened 6 years ago by balhoff
  0

• Apply SPARQL update to add missing providedBy annotations

  #84 opened 6 years ago by balhoff
  2

• GPAD location

  #49 opened 7 years ago by tonysawfordebi
  7

• why is Noctua inferring an MF from the process the gene is annotated to

  #45 opened 7 years ago by krchristie
  7

• Regulates_o_occurs_in (ref: gomodel:59a9023b00000107)

  #44 opened 7 years ago by BarbaraCzub
  18

• How to delete a model? -> (ref: gomodel:598826eb00000261)

  #42 opened 7 years ago by BarbaraCzub
  7

• Protein isoform identifiers-> (ref: gomodel:5993df9e00000254)

  #36 opened 7 years ago by BarbaraCzub
  6

• Model is frozen? (ref: gomodel:586fc17a00001826)

  #40 opened 7 years ago by BarbaraCzub
  1

• Noctua GO terms update? (ref: gomodel:586fc17a00001446)

  #39 opened 7 years ago by BarbaraCzub
  2

• Is there a way to select several individuals and move them together? (ref: gomodel:586fc17a00001446)

  #38 opened 7 years ago by BarbaraCzub
  2

• Can model histories or change sets be viewed?

  #35 opened 7 years ago by BarbaraCzub
  5

• test-corvallis (ref: gomodel:593423e000000013)

  #34 opened 7 years ago by vanaukenk
  0

• my new issue (ref: gomodel:SYNGO_110_test)

  #33 opened 7 years ago by vanaukenk
  0

• zebrafish caspase model demo

  #32 opened 7 years ago by sramachand
  0

• Check SynGO import is functional (ref: gomodel:SYNGO_110_test)

  #31 opened 7 years ago by cmungall
  0

• lack of connection between cell types and anatomical structures

  #30 opened 7 years ago by kltm
  4

• Test issue, please close (reference: gomodel:55ad81df00000001)

  #29 opened 7 years ago by kltm
  0

• Test issue concerning gomodel:55ad81df00000001

  #27 opened 7 years ago by kltm
  0