PathwayMerger/PathMe

Issues

• other incompatibilities

  #41 opened 2 years ago by flalix
  1

• could not install pathme, and I found a solution

  #40 opened 2 years ago by flalix
  1

• Weighting pathways by strength (e.g., citation count)?

  #36 opened 6 months ago by SamuelMarks
  1

• Please add `sqlalchemy=1.3.24` and `diffupath` as a required packages in `setup.cfg`

  #38 opened 4 years ago by shivashankarv
  0

• Error while running `download` command for database `kegg`

  #39 opened 4 years ago by shivashankarv
  0

• Error when using `--flatten`

  #35 opened 4 years ago by MahShaaban
  0

• Pass flake8

  #31 opened 5 years ago by cthoyt
  0

• Add NCI PID - Pathways

  #23 opened 5 years ago by ddomingof
  1

• Error related to sqlalchemy in middle of BEL processing

  #28 opened 5 years ago by mtvector
  9

• Cryptic Errors Related to "compath_utils.models.CompathPathwayMixin" when running `pathme wikipathways bel`

  #27 opened 5 years ago by mtvector
  14

• Update ReadTheDocs to have the conversion table from supplementary info of paper

  #24 opened 5 years ago by cthoyt
  0

• Dump for HiPathia

  #22 opened 5 years ago by cthoyt
  0

• Reactome BPs hiearchy automatic building

  #19 opened 6 years ago by ddomingof
  0

• Fix PDB ids pointing to Chebi in Reactome

  #15 opened 6 years ago by sarahbeenie
  0

• Directed interaction should be turned into "regulates" edge

  #17 opened 6 years ago by cthoyt
  2

• Cannot visualize graph with pybel-jupyter

  #18 opened 6 years ago by leonweber
  7

• Increase zoom range [D3.js]

  #16 opened 6 years ago by ddomingof
  0

• Docs not showing automembers

  #14 opened 6 years ago by ddomingof
  0

• Key error when populating Reactome

  #13 opened 6 years ago by cthoyt
  0

• Reimplement pathme.utils.parse_id_uri with urllib.parse

  #12 opened 6 years ago by cthoyt
  0

• Fix docs

  #11 opened 6 years ago by ddomingof
  0

• Use explicit keyword arguments in pathme.utils.entry_result_to_dict

  #1 opened 6 years ago by cthoyt
  0

• Get flake8-kegg to passing

  #10 opened 6 years ago by cthoyt
  0

• Don't make KEGG BEL again if it's already cached

  #5 opened 6 years ago by cthoyt
  0

• Add CLI command for summarizing KEGG

  #7 opened 6 years ago by cthoyt
  0

• is_flag should be set to True

  #4 opened 6 years ago by cthoyt
  0

• Improve documentation for xml_complexes_to_bel

  #3 opened 6 years ago by cthoyt
  2

• Update checking for None

  #2 opened 6 years ago by cthoyt
  1