Pinned Repositories
ARES-implement
ARES implement in PyTorch
arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
best-resume-ever
:necktie: :briefcase: Build fast :rocket: and easy multiple beautiful resumes and create your best CV ever! Made with Vue and LESS.
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
detect-mutations
Python script for detecting mutations in aligned reads (.bam |.sam) e.g. from RNA base conversion techniques such as TimeLapse, SLAM-seq, TUC-seq
dotfiles
fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
graphein
Protein Graph Library
langchain
⚡ Building applications with LLMs through composability ⚡
shivashankarv's Repositories
shivashankarv/detect-mutations
Python script for detecting mutations in aligned reads (.bam |.sam) e.g. from RNA base conversion techniques such as TimeLapse, SLAM-seq, TUC-seq
shivashankarv/ARES-implement
ARES implement in PyTorch
shivashankarv/arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
shivashankarv/best-resume-ever
:necktie: :briefcase: Build fast :rocket: and easy multiple beautiful resumes and create your best CV ever! Made with Vue and LESS.
shivashankarv/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
shivashankarv/DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
shivashankarv/dotfiles
shivashankarv/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
shivashankarv/graphein
Protein Graph Library
shivashankarv/langchain
⚡ Building applications with LLMs through composability ⚡
shivashankarv/lit-gpt
Hackable implementation of state-of-the-art open-source LLMs based on nanoGPT. Supports flash attention, 4-bit and 8-bit quantization, LoRA and LLaMA-Adapter fine-tuning, pre-training. Apache 2.0-licensed.
shivashankarv/lit-llama
Implementation of the LLaMA language model based on nanoGPT. Supports flash attention, Int8 and GPTQ 4bit quantization, LoRA and LLaMA-Adapter fine-tuning, pre-training. Apache 2.0-licensed.
shivashankarv/llama
Inference code for LLaMA models
shivashankarv/micrograd
A tiny scalar-valued autograd engine and a neural net library on top of it with PyTorch-like API
shivashankarv/neograd
A deep learning framework created from scratch with Python and NumPy
shivashankarv/notion-py
Unofficial Python API client for Notion.so
shivashankarv/ProjectTemplate
A template utility for R projects that provides a skeletal project.
shivashankarv/protpardelle
Diffusion-based all-atom protein generative model.
shivashankarv/pyscript
Home Page: https://pyscript.net Examples: https://pyscript.net/examples
shivashankarv/Resume-Job-Description-Matching
parsing
shivashankarv/shivashankarv.github.io
shivashankarv/tinygrad
You like pytorch? You like micrograd? You love tinygrad! ❤️
shivashankarv/toynn
toynn
shivashankarv/UTR-LM