biological-expression-language
There are 71 repositories under biological-expression-language topic.
pybel/pybel
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
cthoyt/doctoral-thesis
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
bio2bel/bio2bel
A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
PathwayMerger/PathMe
Harmonizing pathway databases using Biological Expression Language (BEL)
bio2bel/kegg
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
bel2scm/bel2scm
Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)
bio2bel/drugbank
A Bio2BEL package for DrugBank (https://www.drugbank.ca)
pybel/pybel-notebooks
Notebooks demonstrating the usage of PyBEL and PyBEL Tools
bel-enrichment/bel-enrichment
A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL
pybel/hetionet-bel
A BEL export of Hetionet (https://github.com/hetio/hetionet)
bio2bel/hmdb
A Bio2BEL package for converting the Human Metabolite Database (HMDB) to BEL
bio2bel/pubchem
NCBI PubChem to BEL
bio2bel/reactome
Integration of pathway-related information from Reactome in BEL
pybel/pybel-tools
A PyBEL extension for analyzing BEL graphs
bel-commons/bel-commons
An environment for curating, validating, and exploring knowledge assemblies encoded in BEL
biological-expression-language/biological-expression-language.github.io
The community homepage for the Biological Expression Language (BEL)
pharmacome/conib
Curation of Neurodegeneration in Biological Expression Language (CONIB)
pharmacome/curation
Guidelines and procedures for curation (manual and semi-automated)
bio2bel/doid
A Bio2BEL package for the Disease Ontology (http://www.disease-ontology.org)
bio2bel/mesh
A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)
bio2bel/wikipathways
Integration of pathway-related information from WikiPathways in BEL
CoronaWhy/bel4corona
Code, notebooks, and resources for exploring and analyzing mechanistic knowledge graphs about 'rona
cthoyt/cthoyt.github.io
My personal website, served at https://cthoyt.com
hemekg/hemekg
Modeling heme pathogenicity and pathway dysregulation in the context of hemolytic disorders
bio2bel/bio2bel-notebooks
Notebooks demonstrating the usage of Bio2BEL packages
bio2bel/ctd
A Bio2BEL package for converting the Comparative Toxicogenomics Database (CTD) to BEL
bio2bel/ddr
Disease-disease relationships from Menche et al.
bio2bel/hgnc
Hugo Gene Nomenclature Consortium (HGNC) to BEL
pybel/pybel-jupyter
A PyBEL extension for Jupyter notebooks
bel-curation/pybel-git
Git and continuous integration tools for PyBEL to assist in curating BEL
bio2bel/adeptus
Convert differential gene expression signatures for diseases from ADEPTUS to BEL
bio2bel/bio2bel-manuscript
LaTeX source for "Bio2BEL: Integration of Structured Knowledge with Biological Expression Language"
bio2bel/hsdn
Convert Himmerlstein's reproduction of the Human Symptom-Disease network to BEL
pybel/bel-repository
A utility for loading data from repositories of BEL documents
pybel/bel-resources
Utilities for BEL resource files.