/ctd

A Bio2BEL package for converting the Comparative Toxicogenomics Database (CTD) to BEL

Primary LanguagePythonMIT LicenseMIT

Bio2BEL CTD

Enrich BEL graphs with the impact of chemical perturbagens on biological entities and systems.

Installation Current version on PyPI Stable Supported Python Versions MIT License

bio2bel_ctd can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_ctd

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/ctd.git@master

Setup

The CTD can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_ctd
>>> ctd_manager = bio2bel_ctd.Manager()
>>> ctd_manager.populate()

Command Line Utility

bio2bel_ctd populate

Acknowledgements

This package heavily relies on Christian Ebeling's PyCTD.