deeenes
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Pinned Repositories
bioinfo-tools
Collection of Python and other data analysis resources
logger
A lightweight, modern and flexible, log4j and futile.logger inspired logging utility for R
NATMI
NATMI: Network Analysis Toolkit for the Multicellular Interactions
progeny-py
PROGENY Python implementation
vaccipy
Automatische Terminbuchung für den Corona Impfterminservice.
lipyd
Python module for lipidomics LC MS/MS data analysis
omnipath
Python client for the OmniPath web service
omnipath_analysis
analysis and visualization workflows for the OmniPath 2 paper
OmnipathR
R client for the OmniPath web service
pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
deeenes's Repositories
deeenes/bioinfo-tools
Collection of Python and other data analysis resources
deeenes/logger
A lightweight, modern and flexible, log4j and futile.logger inspired logging utility for R
deeenes/NATMI
NATMI: Network Analysis Toolkit for the Multicellular Interactions
deeenes/progeny-py
PROGENY Python implementation
deeenes/vaccipy
Automatische Terminbuchung für den Corona Impfterminservice.
deeenes/aur_neo4j-enterprise
Updates for the `neo4j-enterprise` Arch Linux package
deeenes/bio2bel-cookiecutter
A cookiecutter bio2bel repositories
deeenes/CARNIVAL
CAusal Reasoning for Network Identification with integer VALue programming in R
deeenes/corneto
CORNETO: A Unified Omics-Driven Framework for Network Inference
deeenes/cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
deeenes/data_tools
Collection of Python functions and classes designed to make data scientists' life easier.
deeenes/decoupleR
R package to infer biological activities from omics data using a collection of methods.
deeenes/DoRothEA
Discriminant Regulon Enrichment Analysis. A set of tools to compute individual TF activities
deeenes/HuMMuS
deeenes/jupyter_contrib_nbextensions
A collection of various notebook extensions for Jupyter
deeenes/liana
LIANA: a LIgand-receptor ANalysis frAmework
deeenes/liana-py
LIANA+: an all-in-one framework for cell-cell communication
deeenes/mistyR
Multiview Intercellular SpaTial modeling framework
deeenes/nbsphinx
:ledger: Sphinx source parser for Jupyter notebooks
deeenes/ocean
R package for metabolic enzyme enrichment anaylsis
deeenes/progeny
R package for Pathway RespOnsive GENe activity inference
deeenes/pyreadr
Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
deeenes/python-igraph
Python interface for igraph
deeenes/renv
renv: Project environments for R.
deeenes/requests-cache
Persistent HTTP cache for python requests
deeenes/supraHex
An open-source R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map
deeenes/tqdm
A fast, extensible progress bar for Python and CLI
deeenes/unexport
:eight_spoked_asterisk: Unexport is a linter that tries to keep the __all __ in your Python modules always up to date.
deeenes/X2100-BIOS-EC
A collection of BIOS/EC patches for the X2100
deeenes/xlrd
Library for developers to extract data from Microsoft Excel (tm) spreadsheet files