saezlab/pypath

Issues

• Link in pypath to unichem seems broken

  #299 opened 3 months ago by pluthert
  5

• CellPhoneDB v5 (update and is_ppi flag)

  #269 opened a year ago by dbdimitrov
  14

• SyntaxError: f-string: unmatched '['

  #297 opened 5 months ago by maca8e
  2

• pypath logging results in AttributeError during ramp db calls

  #296 opened 5 months ago by maca8e
  2

• Unable to download progeny mouse model

  #218 opened 5 months ago by jpfeil
  10

• Unable to use resources.get_controller() function

  #226 opened 5 months ago by Tama-sha
  7

• error: Error -3 while decompressing data: invalid code lengths set

  #290 opened 5 months ago by Ryeeeeeeeeee
  7

• Faulty behavior in function generation in kegg_api module

  #220 opened 5 months ago by MelihDarcanxyz
  2

• Dictionaries as a standard

  #205 opened 5 months ago by MelihDarcanxyz
  1

• Future of the pypath.share.curl module

  #199 opened 5 months ago by MelihDarcanxyz
  13

• Base Class for Authorization required APIs

  #193 opened 5 months ago by MelihDarcanxyz
  3

• ```_req_headers_list``` in curl module doesn't work as intended

  #191 opened 5 months ago by MelihDarcanxyz
  4

• omnipathdb.org: 500 Internal Server Error

  #294 opened 5 months ago by AtanasiuDemian
  1

• Server is down

  #295 opened 6 months ago by nilcam
  1

• CellphoneDB v4

  #200 opened 2 years ago by JanLeipzig
  6

• NameError: name '_const' is not defined

  #293 opened a year ago by RicoBorra
  1

• Failed to import mapping from pypath.utils

  #292 opened a year ago by mauripops
  0

• Can't import the core module

  #289 opened a year ago by xiangpin
  1

• Circular Import errors on the latest version

  #288 opened a year ago by austinv11
  0

• Unable to load Omnipath

  #287 opened a year ago by alberto-valdeolivas
  4

• Trouble importing and accessing omnipath from pypath

  #275 opened a year ago by hcl1216
  13

• Cannot retrieve progeny weights for mouse: url for homologene needs to be updated

  #278 opened a year ago by ruhisayana
  4

• Import error on `from pypath.utils import mapping`

  #236 opened a year ago by ivirshup
  12

• CellChatDB Update

  #272 opened a year ago by dbdimitrov
  0

• ICELLNET Update

  #271 opened a year ago by dbdimitrov
  2

• AttributeError: module 'pypath.share.common' has no attribute 'DATA'

  #277 opened a year ago by mcjmigdal
  2

• Interested in an RSE position?

  #268 opened a year ago by iulusoy
  0

• NicheNet LR prior knowledge

  #274 opened a year ago by dbdimitrov
  0

• Cannot import mapping

  #257 opened 2 years ago by ivanovaos
  3

• Database (partially?) down

  #262 opened 2 years ago by pokedthefrog
  1

• Mapping Yeast Uniprot/GeneSymbol/ORF issues

  #259 opened 2 years ago by alexandre239
  0

• GO data retrieval gets stuck on page 670

  #253 opened 2 years ago by leonarle
  0

• Cannot load mouse progeny dataframe using decoupler

  #256 opened 2 years ago by emir-radkevich
  2

• Inconsistent interactions in the python and web 'interactions' data.

  #255 opened 2 years ago by mgrantpeters
  3

• Conflict when merging evidences

  #249 opened 2 years ago by marcorusc
  0

• `ValueError: I/O operation on closed file` in `mapping.py`

  #248 opened 2 years ago by bnymnsen
  1

• Error in homology transformation

  #241 opened 2 years ago by alberto-valdeolivas
  5

• Cannot Import Pypath

  #240 opened 2 years ago by cheys08
  1

• Cache management: Setting a different cache directory

  #238 opened 2 years ago by t-silvers
  3

• Import of `share.common` fails in Python 3.9 due to new format type hints

  #230 opened 2 years ago by Tama-sha
  2

• Unable to use collect_network

  #229 opened 2 years ago by Tama-sha
  1

• Missing required dependancy psutils

  #233 opened 2 years ago by PauBadiaM
  3

• Problem while loading database

  #231 opened 2 years ago by marcorusc
  2

• TypeError: unsupported operand type(s) for |: 'type' and 'types.GenericAlias'

  #224 opened 2 years ago by snewhouse
  2

• The `complexes` query reports stripped references incorrectly

  #214 opened 2 years ago by pokedthefrog
  2

• OSError when using ```mapping.py```

  #206 opened 2 years ago by bnymnsen
  0

• TypeError after upgrading pypath

  #203 opened 2 years ago by bnymnsen
  4

• 'Literal' is not defined in pypath/omnipath/app.py:617

  #202 opened 2 years ago by t-silvers
  1

• Problem with pip installation

  #192 opened 3 years ago by marcorusc
  4

• Data import failing after uniprot changes

  #189 opened 3 years ago by dnjst
  2