Pinned Repositories
casskit
casskit: cancer association studies toolkit
conda-utils
dos_abstract_book
EpigeneticRegulators_MouseGastrulation
Epigenetic regulator function through mouse gastrulation
fraserhead
Fraser lab slackbot for onboarding new lab members.
iSA
in silico Strand Annealing
kerr_mean_field_paper_2021
Mann-Kendall-Trend
Simple python function to run Mann-Kendall Test for Trend
manuscript-stub
mm-dev-data-explorer
t-silvers's Repositories
t-silvers/casskit
casskit: cancer association studies toolkit
t-silvers/dos_abstract_book
t-silvers/EpigeneticRegulators_MouseGastrulation
Epigenetic regulator function through mouse gastrulation
t-silvers/fraserhead
Fraser lab slackbot for onboarding new lab members.
t-silvers/iSA
in silico Strand Annealing
t-silvers/kerr_mean_field_paper_2021
t-silvers/Mann-Kendall-Trend
Simple python function to run Mann-Kendall Test for Trend
t-silvers/manuscript-stub
t-silvers/mm-dev-data-explorer
t-silvers/OpenOmics
A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.
t-silvers/plaac
Prion-Like Amino Acid Composition
t-silvers/popgen-notes
Population genetics notes
t-silvers/presentation-stub
t-silvers/pyNBS
Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
t-silvers/pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
t-silvers/pyrty
Use R snippets as python functions. Manage R dependencies separately.
t-silvers/RCK
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
t-silvers/SAME
Somatic mutation Association test with Measurement Errors
t-silvers/epiclock
t-silvers/public_cancer_db
t-silvers/ratio_corr_gammas
t-silvers/thePrecisionLasso
implementation for the Precision Lasso
t-silvers/TLS
Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites
t-silvers/xenaPython
Python API for Xena Hub
t-silvers/yaglm
A python package for penalized generalized linear models that supports fitting and model selection for structured, adaptive and non-convex penalties.