t-silvers's Stars
mikefarah/yq
yq is a portable command-line YAML, JSON, XML, CSV, TOML and properties processor
sanger-bentley-group/gps-pipeline
Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
FredHutch/easybuild-life-sciences
Howto and implementation documentation
dpath-maintainers/dpath-python
A python library for accessing and searching dictionaries via /slashed/paths ala xpath.
marbl/Mash
Fast genome and metagenome distance estimation using MinHash
xflouris/libpll
Phylogenetic Likelihood Library
boostorg/boost
Super-project for modularized Boost
HaoZeke/Dotfiles
Dotfiles with dotgit, zsh, emacs, vim and bspwm for mouseless work.
etetoolkit/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
agarrharr/awesome-cli-apps
🖥 📊 🕹 🛠 A curated list of command line apps
cea-hpc/modules
Environment Modules: provides dynamic modification of a user's environment
higlass/higlass-manage
A utility script to manage local docker instances of HiGlass
jakevc/karyopype
A chromosomal visualization package for python.
nf-core/bacass
Simple bacterial assembly and annotation pipeline
metagenome-atlas/atlas
ATLAS - Three commands to start analyzing your metagenome data
snakemake/snakefmt
The uncompromising Snakemake code formatter
flux-framework/flux-operator
Deploy a Flux MiniCluster to Kubernetes with the operator
kubernetes-sigs/kueue
Kubernetes-native Job Queueing
snakemake/snakemake-executor-plugin-kueue
A Snakemake executor plugin to enable running jobs with Kueue on Kubernetes
kward/shunit2
shUnit2 is a xUnit based unit test framework for Bourne based shell scripts.
Netflix/maestro
Maestro: Netflix’s Workflow Orchestrator
gedeck/mistat
Modern Industrial Statistics: with applications in Python, 3rd edition
google-deepmind/chex
popsim-consortium/stdpopsim
A library of standard population genetic models
luiarthur/TuringBnpBenchmarks
Benchmarks of Bayesian Nonparametric models in Turing and other PPLs
ericmjl/dl-workshop
Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!
EEA-sensors/Bayesian-Filtering-and-Smoothing
Companion Matlab and Python codes for the book Bayesian Filtering and Smoothing by Simo Särkkä and Lennart Svensson
tldr-pages/tldr
📚 Collaborative cheatsheets for console commands
mirivar/GP-age
vnmabus/rdata
Reader of R datasets in .rda format, in Python