molecular-biology
There are 133 repositories under molecular-biology topic.
bebop/poly
A Go package for engineering organisms.
Edinburgh-Genome-Foundry/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
pallada-92/dna-3d-engine
3d engine implementation in DNA code!
3dem/relion
Image-processing software for cryo-electron microscopy
lightdock/lightdock
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
saezlab/pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
BlueBrain/BioExplorer
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
paulstothard/sequence_manipulation_suite
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
BojarLab/glycowork
Package for processing and analyzing glycans and their role in biology.
Edinburgh-Genome-Foundry/DnaCauldron
:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
timdecode/LifeBrush
A toolkit for painting agent-based mesoscale molecular simulations and illustrations.
bpucker/teaching
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
saezlab/mistyR
Multiview Intercellular SpaTial modeling framework
Edinburgh-Genome-Foundry/crazydoc
Read DNA sequences from colourful Microsoft Word documents
QCB-Collaboratory/W17.MachineLearning
Course material for the Collaboratory Workshop "Machine Learning with Python"
cryoem-uoft/cryosparc-tools
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
Edinburgh-Genome-Foundry/Caravagene
🎨 Python library to plot multi-part genetic constructs
MahShaaban/pcr
Quality assessing, analyzing and testing the statistical significance of real-time quantitative PCR data
mims-harvard/pathways
Disease pathways in the human interactome
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
Koeng101/dnadesign
A Go package for designing DNA.
Edinburgh-Genome-Foundry/BandWagon
🎺 Plot DNA digestion band patterns with Python
hyeshik/tailseeker
Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
cryoem-uoft/cryosparc2_public
CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
fsestini/zsyntax
Automated theorem prover for a linear logic-based calculus for molecular biology.
johnnytam100/awesome-protein-design
A curated list of awesome protein design research, software and resources.
jvrana/DASi-DNA-Design
A Python molecular biology CAD tool with a dead-simple user interface
jvrana/primer3-py-plus
A easy-to-use Python API for Primer3 primer design.
MoTrPAC/MotrpacRatTraining6moData
Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
sdhutchins/labrat
A basic science lab framework aimed at reproducibility and lab management.
pombo-lab/gamtools
Processing, quality control and analysis of GAM datsets
shiwentao00/Graphsite-classifier
Ligand-binding site classification with deep graph neural networks.
V-Z/course-r-mol-data
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
SuLab/WikiGenomesBase
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
anocca-ab/sequence-viewer
A DNA and protein sequence viewer developed and maintained by Anocca
emmawahl/facepai
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.