Pinned Repositories
ngseasy
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
awesome-genetics-software
A list of cool software for genetic analysis and the like
BRC_MH_Bioinformatics
Collection of pipelines, workflows and scripts for processing SNP and gene expression arrays and NGS data
broom
Convert statistical analysis objects from R into tidy format
datasharing
The Leek group guide to data sharing
enrichr-api
python script to programmatically enrich your data using Enrichr API
exotic-dna-ngs
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
ml_h2o_spark
playing with Sparkling Water
TextHunter
TextHunter - User Friendly Annotation and Concept Extraction Tool
snewhouse's Repositories
snewhouse/awesome-genetics-software
A list of cool software for genetic analysis and the like
snewhouse/Data-Analysis
Data Science Using Python
snewhouse/azure-voting-app-redis
Azure voting app used in docs.
snewhouse/bern
A neural named entity recognition and multi-type normalization tool for biomedical text mining
snewhouse/Best-README-Template
An awesome README template to jumpstart your projects!
snewhouse/biograkn-covid
BioGrakn - COVID Knowledge Graph
snewhouse/bioinformatics_course
snewhouse/connect
The swiss army knife of healthcare integration.
snewhouse/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
snewhouse/data-cleaning-rmotr-freecodecamp
snewhouse/electron
:electron: Build cross-platform desktop apps with JavaScript, HTML, and CSS
snewhouse/exomiser-clone
snewhouse/forecast-app
Application Link
snewhouse/github-issue-templates
:symbols: A collection of GitHub issue and pull request templates
snewhouse/govuk-rfcs
GOV.UK staff use this repository as a forum to discuss and make technical decisions
snewhouse/GWAStutorial
GWAS tutorial
snewhouse/ISLR-python
An Introduction to Statistical Learning (James, Witten, Hastie, Tibshirani, 2013): Python code
snewhouse/jupyter_contrib_nbextensions
A collection of various notebook extensions for Jupyter
snewhouse/katacoda-scenarios
Katacoda Scenarios
snewhouse/main
Framework to streamline use of neural networks
snewhouse/mlflow-with-streamlit
Simple demonstration of interactions between a streamlit app and the mlflow tracking api
snewhouse/nextflow_machine_learning
GPU deterministic machine learning with Nextflow
snewhouse/ob_google-bigquery
This service is meant to simplify running Google Cloud operations, especially BigQuery tasks. This means you do not have to worry about installation, configuration or ongoing maintenance related to an SDK environment. This can be helpful to those who would prefer to not to be responsible for those activities.
snewhouse/PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
snewhouse/public
Public documents for the Master of Data Science program at the University of British Columbia
snewhouse/snewhouse.github.io
snewhouse/streamlit-pandas-profiling
Pandas profiling component for Streamlit.
snewhouse/Streamlit_DataScience_Apps
Streamlit Data Science and ML Apps in Python
snewhouse/test
snewhouse/VBoxMacSetup
Bash Script to Setup VBox MacOS Guest