error in homology_translate
Closed this issue · 1 comments
gabora commented
Hi Denes,
I'm trying to translate mouse to human genes using the following command:
OmnipathR::homology_translate(d = c("Agtr2","Akr1c18", "Btla"),target = "human",source = "mouse",ensembl_orthology_types = "one2one")
This leads to the error
Error in `sym()`:
! Can't convert a character `NA` to a symbol.
Run `rlang::last_error()` to see where the error occurred.
Warning message:
One or more parsing issues, call `problems()` on your data frame for details, e.g.:
dat <- vroom(...)
problems(dat)
The line that throws the error is this:
target2_id_type <- sym(id_types[3])
the issue seems to be that id_types
is length of 2
deeenes commented
Hi Attila, That function is not supposed to work yet, I shouldn't have exported it. Currently this function should work for homology translation.