liuxiaoping2020

asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

awesome-graph-transformer

Papers about graph transformers.

barcode-multiplets

Code and processed data to reproduce the barcode multiplet 10x paper

CBioExplorer_reference

CBioExplorerDatasource

CBioExplorerSource

CBioProfiler

CBioProfiler_reference

dlwpt-code

Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.

HGPN

[MICCAI 2021] Hierarchical Graph Pathomic Network for Progression Free Survival Prediction

liuxiaoping2020/dlwpt-code

Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.

liuxiaoping2020/HGPN

[MICCAI 2021] Hierarchical Graph Pathomic Network for Progression Free Survival Prediction

liuxiaoping2020/asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

liuxiaoping2020/awesome-graph-transformer

Papers about graph transformers.

liuxiaoping2020/barcode-multiplets

Code and processed data to reproduce the barcode multiplet 10x paper

liuxiaoping2020/CBioExplorer_reference

liuxiaoping2020/CBioExplorerDatasource

liuxiaoping2020/CBioExplorerSource

liuxiaoping2020/CBioProfiler

liuxiaoping2020/CBioProfiler_reference

liuxiaoping2020/CBioProfiler_tutorial

liuxiaoping2020/CBioProfilerDatasource

liuxiaoping2020/CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

liuxiaoping2020/HumanBreastCellAtlas

Repository for codes for the HBCA paper

liuxiaoping2020/KIRCstudy

liuxiaoping2020/mtscATACpaper_reproducibility

Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020

liuxiaoping2020/OCmanu

liuxiaoping2020/ov

liuxiaoping2020/pytorch-GNN-1st

liuxiaoping2020/pytorch-GNN-2nd-

liuxiaoping2020/spatial.transcriptomics

liuxiaoping2020/SurvivalNet

Deep learning survival models