lixiangchun
Bioinformatics analysis of NGS data & application of deep learning for omics data
Tianjin Medical University Cancer Institute & HospitalTianjin
Pinned Repositories
AIplus
AI + medical imaging, cancer genomics, and single cell etc
ascat
ASCAT copy number R package
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
decipherMutationalSignatures
Deciphering mutational signatures with alternative algorithms
iSEEEK
A universal approach for integrating super large-scale single-cell transcriptomes by exploring gene rankings
lxctk
My personal toolkit
Miscell
Mining Information from Single-Cell high-throughput transcriptome data
mynotebook
My daily notebook on bioinformatic data analysis and machine learning
survminer
Survival Analysis and Visualization
tGPT
Generative pretraining on rankings of top-expressing genes
lixiangchun's Repositories
lixiangchun/mynotebook
My daily notebook on bioinformatic data analysis and machine learning
lixiangchun/decipherMutationalSignatures
Deciphering mutational signatures with alternative algorithms
lixiangchun/iSEEEK
A universal approach for integrating super large-scale single-cell transcriptomes by exploring gene rankings
lixiangchun/Miscell
Mining Information from Single-Cell high-throughput transcriptome data
lixiangchun/AIplus
AI + medical imaging, cancer genomics, and single cell etc
lixiangchun/lxctk
My personal toolkit
lixiangchun/tGPT
Generative pretraining on rankings of top-expressing genes
lixiangchun/survminer
Survival Analysis and Visualization
lixiangchun/ascat
ASCAT copy number R package
lixiangchun/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
lixiangchun/brms
Fit Bayesian generalized (non-)linear multilevel models using Stan for full Bayesian inference.
lixiangchun/Core-ML-Sample
A Demo using Vision Framework building on Core ML Framework
lixiangchun/fermi-lite
Standalone C library for assembling Illumina short reads in small regions
lixiangchun/forestmodel
lixiangchun/generative-models
Collection of generative models, e.g. GAN, VAE in Tensorflow, Keras, and Pytorch.
lixiangchun/GenVisR
Genome data visualizations
lixiangchun/GenVisR-1
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GenVisR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GenVisR.
lixiangchun/HMMcopy
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/HMMcopy.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=HMMcopy.
lixiangchun/lixiangchun.github.io
lixiangchun/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
lixiangchun/minialign
fast and accurate alignment tool for PacBio and Nanopore long reads
lixiangchun/openslide-python
Python bindings to OpenSlide
lixiangchun/psofs
Particle swarm optimization for feature selection
lixiangchun/rstan
RStan, the R interface to Stan
lixiangchun/Rtsne
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding
lixiangchun/shinystan
shinystan R package
lixiangchun/SomaticSignatures
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/SomaticSignatures.html Contributions: http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html, https://github.com/julian-gehring/SomaticSignatures-release. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=SomaticSignatures.
lixiangchun/stan
Stan development repository (home page is linked below). The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
lixiangchun/tensorlayer
TensorLayer: Deep Learning and Reinforcement Learning Library for TensorFlow.
lixiangchun/WIT
WSI Inspection via Transformer