Pinned Repositories
agrimet_scraper
Collects weather data from AgriMet
algorithms
Bug-tracking for Jeff's algorithms book, notes, etc.
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
AnatomyOfMatplotlib
Anatomy of Matplotlib -- tutorial developed for the SciPy conference
ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
Anti-desiccant_impact
Scripts used to analyze anti-desiccant impacts on the boxwood phyllosphere microbiome
dash-bootstrap-components
Bootstrap components for Plotly Dash
garden-soil-microbiome
materials used for analyzing garden soil microbiome paper
lixiaopi1985's Repositories
lixiaopi1985/ANCOM
R scripts for Analysis of Composition of Microbiomes (ANCOM).
lixiaopi1985/Anti-desiccant_impact
Scripts used to analyze anti-desiccant impacts on the boxwood phyllosphere microbiome
lixiaopi1985/garden-soil-microbiome
materials used for analyzing garden soil microbiome paper
lixiaopi1985/cdhit
Automatically exported from code.google.com/p/cdhit
lixiaopi1985/CnC_Remastered_Collection
lixiaopi1985/CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier to classify CO1 metabarcode sequences.
lixiaopi1985/ComplexHeatmap
Make Complex Heatmaps
lixiaopi1985/DGE_workshop_salmon
lixiaopi1985/earthnetwork
Microbial co-occurrence network inferred from Earth Microbiome Project
lixiaopi1985/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
lixiaopi1985/isb_course_2020
Materials and tutorials for the 2020 ISB Microbiome Course
lixiaopi1985/johnson_lb_app
Johnson potato lateblight model
lixiaopi1985/lixiaopi1985.github.io
hugo porfolio site
lixiaopi1985/metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
lixiaopi1985/Microbiome-Analysis-Using-R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
lixiaopi1985/microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
lixiaopi1985/nanopolish
Signal-level algorithms for MinION data
lixiaopi1985/NativeBeePollenMetabarcoding
lixiaopi1985/NCBI_Companion
NCBI_Companion targets to construct database from Genbank implementing its API.
lixiaopi1985/OMA
Orchestrating Microbiome Analysis
lixiaopi1985/performance
:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
lixiaopi1985/PLANiTS
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding
lixiaopi1985/Profiling-of-the-soil-microbiome-sturcture-as-a-function-of-cultural-practices-used-in-the-PNW
This repository contained the scripts used in the paper "Profiling of the soil microbiome structure as a function of cultural practices used in the Pacific Northwest potato cropping system"
lixiaopi1985/raindrops_in_the_ocean
🎓 Hugo Academic Theme 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
lixiaopi1985/sand
Statistical Analysis of Network Data with R, 2nd Edition
lixiaopi1985/scRNA-seq
lixiaopi1985/Soil_microbial_communities_responding_to_metam_sodium
R codes for the manuscript "Legacy effects of fumigation on soil bacterial and fungal communities and their response to metam sodium application"
lixiaopi1985/Tax4Fun2
lixiaopi1985/Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
lixiaopi1985/wallin-blite-cast
A web applicaiton for pototato late blight forecasting in Columbia Basin