lizhizhong1992

Pinned Repositories

2019-06-11_GBS_EE
Resource for Genotype-by-Sequencing in Ecology and Evolution workshop
00
abc_inferences
Language:R00
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
Language:Python00
AliTV
Visualize whole genome alignments as linear maps
Language:HTML00
Assembly
Pipelines and scripts related to genome assembly, annotation, and analysis
Language:Python00
ASTRID
Fast, accurate species tree estimation.
Language:C++00
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
Language:PostScript00
bin
scripts
Language:Perl00
bio-pipeline
My collection of light bioinformatics analysis pipelines for specific tasks
Language:C00
genomics_general
General tools for genomic analyses.
Language:Python10

lizhizhong1992's Repositories

lizhizhong1992/genomics_general
General tools for genomic analyses.
Language:Python10
lizhizhong1992/AliTV
Visualize whole genome alignments as linear maps
Language:HTML00
lizhizhong1992/Assembly
Pipelines and scripts related to genome assembly, annotation, and analysis
Language:Python00
lizhizhong1992/ASTRID
Fast, accurate species tree estimation.
Language:C++00
lizhizhong1992/blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
lizhizhong1992/cgat-apps
cgat-apps repository
lizhizhong1992/Coilia_nasus_parallel_evolution
Scripts used in parallel evolution analysis of Coilia nasus
lizhizhong1992/course-linux-command-line-bash-scripting-metacentrum
Don’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple osX, BSD and another UNIX-based systems, not only in Linux. The course is designed for total beginners as well as intermediate advanced students. The only requirement is an interest (or need) to work in command line, typically on Linux computing server.
lizhizhong1992/dDocent
a bash pipeline for RAD sequencing
lizhizhong1992/DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
lizhizhong1992/EasyParallel
lizhizhong1992/ENMwizard
Advanced Techniques for Ecological Niche Modeling Made Easy
lizhizhong1992/FastqSifter
Separate contaminating reads from FASTQ files (e.g., mitochondria, symbionts, bacterial or human contaminants)
lizhizhong1992/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
lizhizhong1992/hhs-omei
lizhizhong1992/LTR-RTE-analysis
lizhizhong1992/Maxent
Maximum entropy modelling of species geographic distributions.
lizhizhong1992/Maya
Maya's Master Thesis
lizhizhong1992/myscripts
lizhizhong1992/plotHicGenome
The tools are used for displaying hic signal of genome
lizhizhong1992/pyscript-bio
生物信息学python代码，专注于重测序文本计算、处理
lizhizhong1992/rad-seq-stacks
lizhizhong1992/reconstruct_mito_genome
Full *dis* assembler for plant mitochondrial genomes
lizhizhong1992/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
lizhizhong1992/shearwater_phylogenomics
lizhizhong1992/shiny_popgen
Shiny apps for teaching Population Genetics
lizhizhong1992/structure-multi-pbspro
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
lizhizhong1992/syntenet
An R package to infer and analyze synteny networks from protein sequences
lizhizhong1992/Tree2gd
lizhizhong1992/tutorials
Tutorials on phylogenetic and phylogenomic inference