Pinned Repositories
bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
biobash
A collection of bash scripts for bioinformatics
dryad
Dryad is a pipeline to construct reference free core-genome or SNP phylogenetic trees for examining prokaryote relatedness in outbreaks.
github-slideshow
A robot powered training repository :robot:
harvest-tools
introducing-python
An introduction to Python
IntroToDataScience
GitHub Repository to accompany my YouTube series of videos on Introductory Data Science using R.
lockdown_learning
mumps
Nextstrain build for mumps virus
mumps-seq
Protocols for sequencing mumps viruses
ljones1359's Repositories
ljones1359/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
ljones1359/biobash
A collection of bash scripts for bioinformatics
ljones1359/dryad
Dryad is a pipeline to construct reference free core-genome or SNP phylogenetic trees for examining prokaryote relatedness in outbreaks.
ljones1359/github-slideshow
A robot powered training repository :robot:
ljones1359/harvest-tools
ljones1359/introducing-python
An introduction to Python
ljones1359/IntroToDataScience
GitHub Repository to accompany my YouTube series of videos on Introductory Data Science using R.
ljones1359/lockdown_learning
ljones1359/mumps
Nextstrain build for mumps virus
ljones1359/mumps-seq
Protocols for sequencing mumps viruses
ljones1359/oneliners
Useful bash one-liners for bioinformatics.
ljones1359/public_health_viral_genomics
ljones1359/PythonForBioinformatics
This repository will be helpful to start using python for your Bioinformatics projects.
ljones1359/Rscripts
ljones1359/SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
ljones1359/sarscov2recombinants
Scan SARS-SoV-2 sequences for potential recombinants
ljones1359/seqtk
Toolkit for processing sequences in FASTA/Q formats
ljones1359/staphb_toolkit
Python Toolkit for using containerized programs in either Singularity or Docker
ljones1359/TB_molecular_epidemiology
Algorithms for TB molecular epidemiology analysis
ljones1359/tormes
Making whole bacterial genome sequencing data analysis easy
ljones1359/viral-pipelines
viral-ngs: complete pipelines
ljones1359/wdl
Workflow Description Language - Specification and Implementations