Pinned Repositories
RefFinder
RefFinder is a user-friendly web-based comprehensive tool developed for evaluating and screening reference genes from extensive experimental datasets. It integrates the currently available major computational programs (geNorm, Normfinder, BestKeeper, and the comparative ��Ct method) to compare and rank the tested candidate reference genes. Based on the rankings from each program, It assigns an appropriate weight to an individual gene and calculated the geometric mean of their weights for the overall final ranking.
OnionDecomposition.jl
A Julia implementation of the algorithms described in Hébert-Dufresne, L. et al., Multi-scale structure and topological anomaly detection via a new network statistic: The onion decomposition. Sci. Rep. 6, 31708; doi: 10.1038/srep31708 (2016)
TopoFun
An R implementation of the genetic algorithm described in Janbain A et al. A machine learning method to improve the functional similarity of gene co-expression modules. NAR Genom Bioinform 2021
ljournot's Repositories
ljournot/OnionDecomposition.jl
A Julia implementation of the algorithms described in Hébert-Dufresne, L. et al., Multi-scale structure and topological anomaly detection via a new network statistic: The onion decomposition. Sci. Rep. 6, 31708; doi: 10.1038/srep31708 (2016)
ljournot/TopoFun
An R implementation of the genetic algorithm described in Janbain A et al. A machine learning method to improve the functional similarity of gene co-expression modules. NAR Genom Bioinform 2021