lkubatko

MO

Code and simulation data for the paper "A Phylogenetic Approach to Inferring the Order in Which Mutations Arise during Cancer Progression", co-authored by Yuan Gao, Jeff Gaither, and Julia Chifman

shiny_genetrees

Shiny app to understand gene tree distributions under the coalescent

example-analysis

Example repo from reproducibility workshop in August 2024

FP-Index-Discordance

Data and Code for the paper "Effects of phylogenetic variation on prioritization of species for conservation" by Kristina Wicke, Md Rejuan Haque, and Laura Kubatko

HilsTest

Code and simulation data for the paper "An Invariants-based Method for Efficient Identification of Hybrid Species From Large-scale Genomic Data", which introduces the Hils Test of hybrid speciation

lkubatko.github.io

LRT

Supplemental Material for Peng et al. 2024

MOMSpeciationTimes

Code and simulations for the paper "Identifiability of speciation times under the multispecies coalescent" co-authored with Julia Chifman.

RDM

Code for the Root Distance Method of Peng et al.

SpeciesTreeConsistency

Simulation scripts and data from Wascher and Kubatko (2020)

lkubatko/MO

Code and simulation data for the paper "A Phylogenetic Approach to Inferring the Order in Which Mutations Arise during Cancer Progression", co-authored by Yuan Gao, Jeff Gaither, and Julia Chifman

lkubatko/shiny_genetrees

Shiny app to understand gene tree distributions under the coalescent

lkubatko/example-analysis

Example repo from reproducibility workshop in August 2024

lkubatko/FP-Index-Discordance

Data and Code for the paper "Effects of phylogenetic variation on prioritization of species for conservation" by Kristina Wicke, Md Rejuan Haque, and Laura Kubatko

lkubatko/HilsTest

Code and simulation data for the paper "An Invariants-based Method for Efficient Identification of Hybrid Species From Large-scale Genomic Data", which introduces the Hils Test of hybrid speciation

lkubatko/lkubatko.github.io

lkubatko/LRT

Supplemental Material for Peng et al. 2024

lkubatko/MOMSpeciationTimes

Code and simulations for the paper "Identifiability of speciation times under the multispecies coalescent" co-authored with Julia Chifman.

lkubatko/RDM

Code for the Root Distance Method of Peng et al.

lkubatko/SpeciesTreeConsistency

Simulation scripts and data from Wascher and Kubatko (2020)