Pinned Repositories
datameta
A submission server for data and associated metadata
a2mgaps
Plot MSA gap statistics from an a2m file
EntrezDownloader
Parallel Entrez Downloads
hmmer2pdf
Plotting tool for HMMER3 hmm files based on TikZ
imseq
IMSEQ - IMmunogenetic SEQuence Analysis
MultiHLA
WES HLA Typing based on multiple alternative tools
SYFPEITHI
Command line epitope prediction based on SYFPEITHI
metapep
From metagenomes to epitopes and beyond
lkuchenb's Repositories
lkuchenb/MultiHLA
WES HLA Typing based on multiple alternative tools
lkuchenb/hmmer2pdf
Plotting tool for HMMER3 hmm files based on TikZ
lkuchenb/EntrezDownloader
Parallel Entrez Downloads
lkuchenb/SYFPEITHI
Command line epitope prediction based on SYFPEITHI
lkuchenb/a2mgaps
Plot MSA gap statistics from an a2m file
lkuchenb/create-demo
Example of building Sphinx docs to GitHub Pages
lkuchenb/datameta
lkuchenb/diaproteomics
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
lkuchenb/dirvish-on-demand
A wrapper for dirvish to enable on demand backups of clients in the local network
lkuchenb/dodreporter
lkuchenb/drs3
lkuchenb/epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
lkuchenb/fred
Python-based framework for computational immunomics
lkuchenb/httpx
A next generation HTTP client for Python. 🦋
lkuchenb/IG-MSA-Tools
lkuchenb/linkml
Linked Open Data Modeling Language
lkuchenb/linkml-runtime
Runtime support for linkml generated models
lkuchenb/mhcquant
Identify and quantify peptides from mass spectrometry raw data
lkuchenb/OpenMS
The codebase of the OpenMS project
lkuchenb/OptiType
Precision HLA typing from next-generation sequencing data
lkuchenb/percolator
Semi-supervised learning for peptide identification from shotgun proteomics datasets
lkuchenb/pre-commit-hooks
Some out-of-the-box hooks for pre-commit
lkuchenb/pyramid
Pyramid - A Python web framework
lkuchenb/pyramid_openapi3
Pyramid addon for OpenAPI3 validation of requests and responses.
lkuchenb/pyramid_tm
Centralized transaction management for Pyramid applications (without middleware)
lkuchenb/pytags_sandbox
lkuchenb/seqan
SeqAn's official repository.
lkuchenb/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
lkuchenb/test-datasets
Test data to be used for automated testing with the nf-core pipelines
lkuchenb/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..