llevitis
PhD candidate at the NIMH & UCL (@ucl-pond) // previously MSc student and software developer @ McGill (@aces)
London, England
Pinned Repositories
Loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
ABAnnotate
A toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data
airspace-jekyll
A port of the Airspace theme by ThemeFisher to Jekyll.
ann4brains
Artificial neural networks for brain networks
APPIAN
APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.
bitcoin
Bitcoin Core integration/staging tree
deep-mri-qc
This project is trained on private MRI data, where scans are marked QC_PASS or QC_FAIL. Several architectures of neural networks are explored to make automatic predictions for new images.
NIH_Multimodal_Aneuploidy_Phenotypes
Codebase for analyses conducted as part of the paper: "The variegation of human brain vulnerability to rare genetic disorders and convergence with behaviorally defined disorders"
xnat_pup_downloader
Repo used to download derivatives stored in the PUP timecourse section of an XNAT server that uses PUP, e.g. the DIAN project.
hackathon2020
Website for the 2020 OHBM Hackathon (Location: 3rd planet from the Sun)
llevitis's Repositories
llevitis/NIH_Multimodal_Aneuploidy_Phenotypes
Codebase for analyses conducted as part of the paper: "The variegation of human brain vulnerability to rare genetic disorders and convergence with behaviorally defined disorders"
llevitis/ABAnnotate
A toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data
llevitis/airspace-jekyll
A port of the Airspace theme by ThemeFisher to Jekyll.
llevitis/xnat_pup_downloader
Repo used to download derivatives stored in the PUP timecourse section of an XNAT server that uses PUP, e.g. the DIAN project.
llevitis/brainhack_jupyter_book
A Jupyter Book of everything Brainhack: past, present and future.
llevitis/comp0088labs
Lab exercises for COMP0088 Introduction to Machine Learning
llevitis/cv
my curriculum vitae
llevitis/DIAN_ESM_AmyloidBeta_Project
Epidemic Spreading Modelling of Amyloid Beta in the Dominantly Inherited Alzheimer's Network dataset
llevitis/eda_organized
BrainHack 2020 good coding practices in MATLAB and Octave
llevitis/exercises
llevitis/freesurfer
recon-all from FreeSurfer
llevitis/ggsegAtlasTrack
llevitis/gitmarklet
gitmarklet: Brief summaries of scientific papers I've read indexed via Github Issues
llevitis/hackathon2020
Website for the 2020 OHBM Hackathon in Montreal
llevitis/jeopardy-prep-work
Notes and notebooks I used to train to compete on Jeopardy!, which I did on February 3rd, 2022.
llevitis/markello_transcriptome
Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)
llevitis/mcvae
Multi-Channel Variational Auto Encoder: A Bayesian Deep Learning Framework for Modeling High-Dimensional Heterogeneous Data.
llevitis/Morphometric_Similarity_SZ
Morphometric similarity in psychosis- data and code
llevitis/multi-view-AE
Multi-view-AE: An extensive collection of multi-modal autoencoders implemented in a modular, scikit-learn style framework.
llevitis/netneurotools
Useful tools from the Network Neuroscience Lab
llevitis/neuroimaging-cookbook.github.io
llevitis/NH19-Visualization
A collection of notebooks demonstrating plotting with matplotlib
llevitis/niivue
a WebGL2 based NIFTI volume viewer
llevitis/niviz
Extensions to niworkflows and nipype for flexible visualization and reporting of pre-existing outputs
llevitis/niviz-rater
Simple web server to configure and carry out QC of MR images
llevitis/ohbm2020-posters
Centralized registry of Jitsi rooms for OHBM 2020 posters.
llevitis/PolySyn_MSNs
Data for: "Transcriptomic and Cellular Decoding of Regional Brain Vulnerability to Neurogenetic Disorders"
llevitis/repro-paper-hippocampal-volumes
llevitis/repro-paper-hippocampal-volumes-v2
llevitis/xcpEngine
Official public repository for the XCP Engine