/rethink-2018-h-and-e-normalization

Primary LanguagePython

rethink-2018-h-and-e-normalization

A Python module for image normalization of H&E stained histology slides.

Dependencies

  • sklearn
  • numpy
  • imageio

Usage

Within another script or program

import imageio
from h_and_e_normalization import colorassign_manual

loaded_image = imageio.imread('/path/to/image.tif')
result = colorassign_manual(loaded_image)

Direct usage

python -m h_and_e_normalization.colorassign_manual -i '/path/to/image.tif' -o '/path/to/output.json'