Genome_assembly_annotation

Authors: wu090& liu194

Major Update: 20220322

📊 Assessment

Kmer_jellyfish.sh Using jellyfish to calculate the Kmer

Ater Purge_dups, I used my python code to select those regions at the end of the begining of a scaffold. See Purge_post/

Parse_purge_dups_opt.py, test.bed, test.chr_size, and test.out

python3 Parse_purge_dups.py -i test.bed -s test.chr_size -o test.out

run_mito_mapp.sh and remove_fa.sh

make_dot_nucmur.sh and mummerCoordsDotPlotly.R (adopted from tpoorten/dotPlotly )