Authors:
Sara Wuitchik (Postdoctoral Associate, Boston University & Harvard University; sjswuit@g.harvard.edu)
LaDeana Hillier (Department of Genome Sciences, Washington University; lhillier@uw.edu)
Chris Balakrishnan (Associate Professor, East Carolina University; balakrishnanc@ecu.edu)
Wes Warren (Professor, University of Missouri; warrenwc@missouri.edu)
Jeff DaCosta (Assistant Professor, Boston College; jeffrey.dacosta@bc.edu)
Mike Sorenson (Professor, Boston University; msoren@bu.edu)
Tim Sackton (Director of Bioinformatics, Informatics Group, Harvard University; tsackton@g.harvard.edu)
Genome assembly and comparative genomics project with the freckled duck (Stictonetta naevosa; stiNae), ruddy duck (Oxyura jamaicensis; oxyJam), African pygmy-goose (Nettapus auritus; netAur), and black-headed duck (Heteronetta atricapilla; hetAtr) from 10x data using Supernova assembly.
Code is being written and optimized, so will change frequently as analyses progress. As of July 22, 2020 - working on 03c_CAT, 05_CompPopGen, & zNCBI_run. Most up-to-date/optimized code will be in zNCBI_run as analyses are refined.