Please follow the instructions in this document
Detailed Workshop Agenda can be found here
- DEGs_5_PAHs.csv
- Norm_Data_Zebrafish_Top5k_CV.csv
- Norm_Data_Zebrafish_Top500_CV_NoOutliers_RepsAv.csv
- Zebrafish_Condition_Info.csv
- Raw_Count_Data_Zebrafish.csv
- Normalized_Data_Synechococcus.csv
- Zebrafish_Condition_Info_Correct_Names.csv
- Norm_Data_Zebrafish_Top5k_CV_NoOutliers.csv
- Norm_Data_Zebrafish_Top5k_CV_NoOutliers_Transpose_ExpAdded.csv
- Norm_Data_Zebrafish_Retene_v_Control_ALL.csv
- Normalized_Data_Synechococcus_Transpose.csv
- graphml file
- sif file
- Normalized_Data_Synechococcus_Transpose_Unwht_9.235387_Min12_Mods.csv
- Normalized_Data_Synechococcus_Transpose_Unwht_9.235387_Min12_Mods_Sizes.csv
- Norm_Data_Zebrafish_Top500_CV_NoOutliers_RepsAv_RowNorm.csv
- 8:30 - 9:30: RNAseq Overview (Lecture)
- 9:30 - 10:00: Post-Sequencing QC (Lecture)
- 10:00 - 10:30: Primary Processing and QC (Lecture)
- 10:30 - 10:45: BREAK
- 10:45 - 12:45: Intro to R/RStudio (Hands-on)
- 12:45 - 1:45: LUNCH (On your own):
- 1:45 - 2:45: Power Analysis in R & Study Design (Lecture & Hands-on)
- 2:45 - 3:45: RNAseq Data Analysis in R (Hands-on)
- 3:45 - 4:00: BREAK
- 4:00 - 5:00: EMT Seminar by Mark Jankowski
- 8:30 - 10:00: RNAseq Data Analysis in R (Hands-on)
- 10:00 - 10:15: BREAK
- 10:15 - 11:30: Omics Data Integration (Lecture & Hands-on)
- 11:30 - 12:30: LUNCH (On your own)
- 12:30 - 2:00: Network Analysis & Visualization (Hands-on)
- 2:00 - 3:00: Data Visualization with Trelliscope (Hands-on) Some general intro slides into trelliscopejs can be found here: https://slides.com/hafen/trelliscopejs/#/