small caps

Question

small caps

fmarletaz opened this issue 4 years ago · 1 comments

Hi -
Thanks for developing pyfastx, very useful and convenient. I had a question: how is pyfastx handling soft masked genomes with lower-case characters, such as soft-masked genomes. I notice sometimes such files generate errors or at least that everything is reverted to capital. Thanks!

Answer 1 · 2021-02-18T14:00:40.000Z

Hi,
You can use uppercase=False to output sequence appeared in FASTA file. Before version 0.8.2, uppercase default was True. I have fixed it in 0.8.2. I hope this can help you.